Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

Click here to switch to the map view.

The map label for this gene is 221635697

Identifier: 221635697

GI number: 221635697

Start: 277647

End: 278015

Strand: Reverse

Name: 221635697

Synonym: trd_A0291

Alternate gene names: NA

Gene position: 278015-277647 (Counterclockwise)

Preceding gene: 221635698

Following gene: 221635696

Centisome position: 30.29

GC content: 65.85

Gene sequence:

>369_bases
ATGTCAGGCCGCTCGTCCCTGCGTGCAGCCTGCCGTTGGTCCCGACAGACGGTTTTCTGGCGAGCCTTCCAGCGTTTCCG
TTCAGGCGACGGGGCTCTCCACGCGTCAGCCATCGCCTCCAGCGCCCTCCTCACGCTCGGACCGTTTCTGCTCTTGCTCG
CCATCGTGACGAGCAGGCTCTTGCGCGGGACGATCCCGCCCGACCTCGTTCTCCAGTTTCTCCTGAGCGAGGTACCGCAC
GCTTCACCATTGGAGCCGGAACTCCGCGGTATCCTGACCAGGCAGGCAGACACCGCGAGCGGGCCGCTGGCACTGGTGAC
CATGCTGCTCTCCCTCTGGTCAGCGAGTGCACTCGGTGCAGCGCTGTGA

Upstream 100 bases:

>100_bases
TATCCTGCTTTCCCGTAACCGACGCCTGCCAGACAGGTCGGTGAGCGCGAGCATGTCGGCGACATCACGGGCGCATCGCC
CGTCCGATCGGGGAGGCACG

Downstream 100 bases:

>100_bases
CGCGGGTTCCTTGCCGTGGCCGCGCCGGAACGATCGGCCTCGTTCGTCCGCGACCGCCTCGACGGCATCGGGGCAACGCT
CGGAGCGCTGGGGCTGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSGRSSLRAACRWSRQTVFWRAFQRFRSGDGALHASAIASSALLTLGPFLLLLAIVTSRLLRGTIPPDLVLQFLLSEVPH
ASPLEPELRGILTRQADTASGPLALVTMLLSLWSASALGAAL

Sequences:

>Translated_122_residues
MSGRSSLRAACRWSRQTVFWRAFQRFRSGDGALHASAIASSALLTLGPFLLLLAIVTSRLLRGTIPPDLVLQFLLSEVPH
ASPLEPELRGILTRQADTASGPLALVTMLLSLWSASALGAAL
>Mature_121_residues
SGRSSLRAACRWSRQTVFWRAFQRFRSGDGALHASAIASSALLTLGPFLLLLAIVTSRLLRGTIPPDLVLQFLLSEVPHA
SPLEPELRGILTRQADTASGPLALVTMLLSLWSASALGAAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13051; Mature: 12920

Theoretical pI: Translated: 12.07; Mature: 12.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRSSLRAACRWSRQTVFWRAFQRFRSGDGALHASAIASSALLTLGPFLLLLAIVTSRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGTIPPDLVLQFLLSEVPHASPLEPELRGILTRQADTASGPLALVTMLLSLWSASALGA
HCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
AL
CC
>Mature Secondary Structure 
SGRSSLRAACRWSRQTVFWRAFQRFRSGDGALHASAIASSALLTLGPFLLLLAIVTSRL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGTIPPDLVLQFLLSEVPHASPLEPELRGILTRQADTASGPLALVTMLLSLWSASALGA
HCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
AL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA