| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633902
Identifier: 221633902
GI number: 221633902
Start: 1939223
End: 1939978
Strand: Reverse
Name: 221633902
Synonym: trd_1929
Alternate gene names: NA
Gene position: 1939978-1939223 (Counterclockwise)
Preceding gene: 221633908
Following gene: 221633901
Centisome position: 96.85
GC content: 69.97
Gene sequence:
>756_bases ATGCGCGTCGCCGTTCTGTCCGATACGCACGGGAACCTGCCAGCGCTCGAGGCAGTCCTCGAGGCCATCGAACAGGACTC GCCCGATCTCGTGGTGATGGCCGGTGATGCGGCCTTCGGCGGCCCCTGGCCAGCCGAATGCATCGATTTCCTCCGCCAGC GCGGAATCCCAGCCGTCCGCGGCAACACCGACGAGTTCCTGGTCGCGGTCGCGACCGGCCGTCCGCCCGCCACGCCGGTG GAGGACCCCCGCCTCGACCATCTGGCCAGTTCCACCCTCGCTGCTCGGTATGCCTGGTGCGTCGAGCGACTACGCAGCGA GCAGATCGATTATCTCGCCTCGTTGCCGCTCCGCTTCGTCGTCCCCGCACCGACCGGCGCGGCGCTGGTCATCGTCCATG CCACACCGTCCAGCCCGCATCCTGTGGTCCCGCCCGATGCCCCGTCCGAGCGACTGCGCGCGCTGCTCGACGAGAGCGGT GGAGCAGCGCTCGCCTACGGGCACATCCACCAGCAAGCCCGTTGGCAGATCGGTAGCCGGTTGGTCGTCGCGGTGGGCAG TGTCGGCCTGCCCTTCGATGGCGACCAGCGCGCCGCCTACGCGCTCCTGGAGTGGAACGGGACGAGCTGGAGCGCCCGCT TTCAGCGCGTTCCCTATCCGGTCGAGCGGACGATCCAGGCACTGGAGCACAGCGGCATGCCGGGAGCCGAGGCGCAGATC CGCGTCCTCCAGACGGCTCGCCCACCGGGAGCCTGA
Upstream 100 bases:
>100_bases TCGGGTGCGCTCCTTCCCTTCCCCGATCTATTCTGCCCGTTGCCAGCACTGGGCGCAGTAGGATCGTACGGGATGAGCAA CGCAGCGAGGAGGGTGAGGT
Downstream 100 bases:
>100_bases GGCAGGCGTGGTACGATTGGCGCGAGACCGGCGCAGGGGTGGAGCGCAGTGCAGCAGATCATGATCACGATCTTCCTCTT CGGGGCAGCTGCGCTGGAGG
Product: putative phosphoesterase
Products: NA
Alternate protein names: Phosphodiesterase; Phosphoesterase; Serine/Threonine Protein Phosphatase; Ser/Thr Protein Phosphatase Family Protein; DNA Repair Protein; Diadenosine Tetraphosphatase; Metallophosphoesterase Calcineurin Superfamily; Phosphatase; Calcineurin Superfamily Metallophosphoesterase; CHAD Domain-Containing Protein; Serine/Threonine Protein Phosphatase Family Protein; Calcineurin Family Phosphoesterase; Ser/Thr Protein Phosphatase; Phosphoesterase-Related Gene; CHAD Domain Containing Protein; Serine /Threonine; Phosphoesterase Protein; Protein Phosphatase; Phosphoesterase-Related Protein; Diadenosine Tetraphosphatase-Like Protein
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MRVAVLSDTHGNLPALEAVLEAIEQDSPDLVVMAGDAAFGGPWPAECIDFLRQRGIPAVRGNTDEFLVAVATGRPPATPV EDPRLDHLASSTLAARYAWCVERLRSEQIDYLASLPLRFVVPAPTGAALVIVHATPSSPHPVVPPDAPSERLRALLDESG GAALAYGHIHQQARWQIGSRLVVAVGSVGLPFDGDQRAAYALLEWNGTSWSARFQRVPYPVERTIQALEHSGMPGAEAQI RVLQTARPPGA
Sequences:
>Translated_251_residues MRVAVLSDTHGNLPALEAVLEAIEQDSPDLVVMAGDAAFGGPWPAECIDFLRQRGIPAVRGNTDEFLVAVATGRPPATPV EDPRLDHLASSTLAARYAWCVERLRSEQIDYLASLPLRFVVPAPTGAALVIVHATPSSPHPVVPPDAPSERLRALLDESG GAALAYGHIHQQARWQIGSRLVVAVGSVGLPFDGDQRAAYALLEWNGTSWSARFQRVPYPVERTIQALEHSGMPGAEAQI RVLQTARPPGA >Mature_251_residues MRVAVLSDTHGNLPALEAVLEAIEQDSPDLVVMAGDAAFGGPWPAECIDFLRQRGIPAVRGNTDEFLVAVATGRPPATPV EDPRLDHLASSTLAARYAWCVERLRSEQIDYLASLPLRFVVPAPTGAALVIVHATPSSPHPVVPPDAPSERLRALLDESG GAALAYGHIHQQARWQIGSRLVVAVGSVGLPFDGDQRAAYALLEWNGTSWSARFQRVPYPVERTIQALEHSGMPGAEAQI RVLQTARPPGA
Specific function: Unknown
COG id: COG0639
COG function: function code T; Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26877; Mature: 26877
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVAVLSDTHGNLPALEAVLEAIEQDSPDLVVMAGDAAFGGPWPAECIDFLRQRGIPAVR CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEC GNTDEFLVAVATGRPPATPVEDPRLDHLASSTLAARYAWCVERLRSEQIDYLASLPLRFV CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE VPAPTGAALVIVHATPSSPHPVVPPDAPSERLRALLDESGGAALAYGHIHQQARWQIGSR EECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCE LVVAVGSVGLPFDGDQRAAYALLEWNGTSWSARFQRVPYPVERTIQALEHSGMPGAEAQI EEEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEE RVLQTARPPGA EEEECCCCCCC >Mature Secondary Structure MRVAVLSDTHGNLPALEAVLEAIEQDSPDLVVMAGDAAFGGPWPAECIDFLRQRGIPAVR CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEC GNTDEFLVAVATGRPPATPVEDPRLDHLASSTLAARYAWCVERLRSEQIDYLASLPLRFV CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE VPAPTGAALVIVHATPSSPHPVVPPDAPSERLRALLDESGGAALAYGHIHQQARWQIGSR EECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCE LVVAVGSVGLPFDGDQRAAYALLEWNGTSWSARFQRVPYPVERTIQALEHSGMPGAEAQI EEEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEE RVLQTARPPGA EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA