Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221633901

Identifier: 221633901

GI number: 221633901

Start: 1938686

End: 1939174

Strand: Reverse

Name: 221633901

Synonym: trd_1928

Alternate gene names: NA

Gene position: 1939174-1938686 (Counterclockwise)

Preceding gene: 221633902

Following gene: 221633900

Centisome position: 96.81

GC content: 67.69

Gene sequence:

>489_bases
GTGCAGCAGATCATGATCACGATCTTCCTCTTCGGGGCAGCTGCGCTGGAGGTGCTCGTCCTGCCGCGCGTCACGCCGTT
CGGCTTGTTCCCTGATCTCGTTCTGGGAGTCGTCCTGGTCGCCAGCGCCCTGGAAGGGATGCGCGCTGGATTCCTTTGGG
CAGCGATGGGGGGGCTGGCGCTCGATCTGCTCGCGGCCAGCCCGCTCGGTGGGCACTTCCTGGCGCTGGTCCCAGCCGTG
CTGGCCGGAACAGCCGCACGGCAGAGCATCTACCGGAGCGCCCTCCTCCCGCTCATGGGGATCGTGGGAGGACTCACGCT
GGGCTACCGGGCGATCCTGCTCTTCGTCCACTGGCCAGCTCGCTGGGAAGCCTGGCTGGACGCGGGAGTGACCGCCATGC
TGGTCGGCATCCTCAACCTGATCGCCGTCCCGCTGGTCTACGGCATCGTCCTACTCGCTGGACGTCTGGGGGTCAGGCGT
GCGCACTAG

Upstream 100 bases:

>100_bases
AGCCGAGGCGCAGATCCGCGTCCTCCAGACGGCTCGCCCACCGGGAGCCTGAGGCAGGCGTGGTACGATTGGCGCGAGAC
CGGCGCAGGGGTGGAGCGCA

Downstream 100 bases:

>100_bases
GCCGGCCCGGCGCGGACTCGATCTTCCCGCGCCGAAGTCGATCGCGCCACCAGAAGAACCGGAACCGACGCGCGACGAGC
GGATGACGCGACGGGTGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLALDLLAASPLGGHFLALVPAV
LAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPARWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRR
AH

Sequences:

>Translated_162_residues
MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLALDLLAASPLGGHFLALVPAV
LAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPARWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRR
AH
>Mature_162_residues
MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLALDLLAASPLGGHFLALVPAV
LAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPARWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRR
AH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17048; Mature: 17048

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLLAASPLGGHFLALVPAVLAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRRAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLLAASPLGGHFLALVPAVLAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRRAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA