| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221633901
Identifier: 221633901
GI number: 221633901
Start: 1938686
End: 1939174
Strand: Reverse
Name: 221633901
Synonym: trd_1928
Alternate gene names: NA
Gene position: 1939174-1938686 (Counterclockwise)
Preceding gene: 221633902
Following gene: 221633900
Centisome position: 96.81
GC content: 67.69
Gene sequence:
>489_bases GTGCAGCAGATCATGATCACGATCTTCCTCTTCGGGGCAGCTGCGCTGGAGGTGCTCGTCCTGCCGCGCGTCACGCCGTT CGGCTTGTTCCCTGATCTCGTTCTGGGAGTCGTCCTGGTCGCCAGCGCCCTGGAAGGGATGCGCGCTGGATTCCTTTGGG CAGCGATGGGGGGGCTGGCGCTCGATCTGCTCGCGGCCAGCCCGCTCGGTGGGCACTTCCTGGCGCTGGTCCCAGCCGTG CTGGCCGGAACAGCCGCACGGCAGAGCATCTACCGGAGCGCCCTCCTCCCGCTCATGGGGATCGTGGGAGGACTCACGCT GGGCTACCGGGCGATCCTGCTCTTCGTCCACTGGCCAGCTCGCTGGGAAGCCTGGCTGGACGCGGGAGTGACCGCCATGC TGGTCGGCATCCTCAACCTGATCGCCGTCCCGCTGGTCTACGGCATCGTCCTACTCGCTGGACGTCTGGGGGTCAGGCGT GCGCACTAG
Upstream 100 bases:
>100_bases AGCCGAGGCGCAGATCCGCGTCCTCCAGACGGCTCGCCCACCGGGAGCCTGAGGCAGGCGTGGTACGATTGGCGCGAGAC CGGCGCAGGGGTGGAGCGCA
Downstream 100 bases:
>100_bases GCCGGCCCGGCGCGGACTCGATCTTCCCGCGCCGAAGTCGATCGCGCCACCAGAAGAACCGGAACCGACGCGCGACGAGC GGATGACGCGACGGGTGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLALDLLAASPLGGHFLALVPAV LAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPARWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRR AH
Sequences:
>Translated_162_residues MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLALDLLAASPLGGHFLALVPAV LAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPARWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRR AH >Mature_162_residues MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLALDLLAASPLGGHFLALVPAV LAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPARWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRR AH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17048; Mature: 17048
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDLLAASPLGGHFLALVPAVLAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH RWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRRAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQQIMITIFLFGAAALEVLVLPRVTPFGLFPDLVLGVVLVASALEGMRAGFLWAAMGGLA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDLLAASPLGGHFLALVPAVLAGTAARQSIYRSALLPLMGIVGGLTLGYRAILLFVHWPA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH RWEAWLDAGVTAMLVGILNLIAVPLVYGIVLLAGRLGVRRAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA