| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633849
Identifier: 221633849
GI number: 221633849
Start: 1884827
End: 1885456
Strand: Reverse
Name: 221633849
Synonym: trd_1876
Alternate gene names: NA
Gene position: 1885456-1884827 (Counterclockwise)
Preceding gene: 221633850
Following gene: 221633848
Centisome position: 94.13
GC content: 66.35
Gene sequence:
>630_bases GTGATGGCCGAGGAACGACGAACTGCGCAACCGGATGAGACGGAAGCCGCCCTCGCGCTGATCCGCGCGGTGCGTCGACG GGTCCGAGCGATCAGCGATGGGGAATCCTGTGACTTCTGTGGTGAGACCCTCGGCCCGGAGCATGGCCACGTGCTCGGAC TCCTCGACCGGCGGTTGCGGTGCGCCTGCCGTGCCTGCTACCTCCTGTTCCTGCCACGAGGCGCTGGGCGCGGGCGATTC TGTGCTGTCCCGCAGCGCTATCGAGCGGTGCGCGATTCCACACTGGTCCAGGAGTGGACGGGGGTCATCTGTGGCCCAGT TCAGCTCGCCTTCGCCTTTCTCCACTCCGGAACCGGACGGATCACGGTCTGCTATCCCAGCCCTCAGGGGCTGGCCGAGT CGTTCCTACCTGACGGCGTACCCATTGTCTCAGCGCTCCGCTCGCTCCTGCAACCTGACGTCGAGGCCCTCCTCTGCTGG CGCCGCGCCGTCGGCGCAGTCACCTTTCTCGTCCCGATCGACGTCTGCTATGAGCTTGTCGCCCGGCTCCGCCTGCCCTC GAACCGGACCGACCTCGACGCGCTGTTGGAGGAGTTTTTCGACCGTCTCCACTCTCGGTGTGAGGAGTAA
Upstream 100 bases:
>100_bases AGAACAGCTCTCCAGCTTGGGAACCGGGAGAGCTGCTCTGCCCACCGGTCGTTGCCTCTCGGGTTGCCTCCCGCAGGGAC ACCCGATGAGAGGAAGCGGG
Downstream 100 bases:
>100_bases GCCGCATGGCCAGATTCCGCTTCCACTGCCTCGATGTCCGACCGGAACCGTACGCCGCCGTGCCGACGCTCGTCTTCCGC TTAGCGATCGCGGAAGAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MMAEERRTAQPDETEAALALIRAVRRRVRAISDGESCDFCGETLGPEHGHVLGLLDRRLRCACRACYLLFLPRGAGRGRF CAVPQRYRAVRDSTLVQEWTGVICGPVQLAFAFLHSGTGRITVCYPSPQGLAESFLPDGVPIVSALRSLLQPDVEALLCW RRAVGAVTFLVPIDVCYELVARLRLPSNRTDLDALLEEFFDRLHSRCEE
Sequences:
>Translated_209_residues MMAEERRTAQPDETEAALALIRAVRRRVRAISDGESCDFCGETLGPEHGHVLGLLDRRLRCACRACYLLFLPRGAGRGRF CAVPQRYRAVRDSTLVQEWTGVICGPVQLAFAFLHSGTGRITVCYPSPQGLAESFLPDGVPIVSALRSLLQPDVEALLCW RRAVGAVTFLVPIDVCYELVARLRLPSNRTDLDALLEEFFDRLHSRCEE >Mature_209_residues MMAEERRTAQPDETEAALALIRAVRRRVRAISDGESCDFCGETLGPEHGHVLGLLDRRLRCACRACYLLFLPRGAGRGRF CAVPQRYRAVRDSTLVQEWTGVICGPVQLAFAFLHSGTGRITVCYPSPQGLAESFLPDGVPIVSALRSLLQPDVEALLCW RRAVGAVTFLVPIDVCYELVARLRLPSNRTDLDALLEEFFDRLHSRCEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23287; Mature: 23287
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 5.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMAEERRTAQPDETEAALALIRAVRRRVRAISDGESCDFCGETLGPEHGHVLGLLDRRLR CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHH CACRACYLLFLPRGAGRGRFCAVPQRYRAVRDSTLVQEWTGVICGPVQLAFAFLHSGTGR HHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCE ITVCYPSPQGLAESFLPDGVPIVSALRSLLQPDVEALLCWRRAVGAVTFLVPIDVCYELV EEEEECCCHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARLRLPSNRTDLDALLEEFFDRLHSRCEE HHHCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMAEERRTAQPDETEAALALIRAVRRRVRAISDGESCDFCGETLGPEHGHVLGLLDRRLR CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHH CACRACYLLFLPRGAGRGRFCAVPQRYRAVRDSTLVQEWTGVICGPVQLAFAFLHSGTGR HHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCE ITVCYPSPQGLAESFLPDGVPIVSALRSLLQPDVEALLCWRRAVGAVTFLVPIDVCYELV EEEEECCCHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARLRLPSNRTDLDALLEEFFDRLHSRCEE HHHCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA