| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is gsiC [H]
Identifier: 221633814
GI number: 221633814
Start: 1850548
End: 1851468
Strand: Reverse
Name: gsiC [H]
Synonym: trd_1841
Alternate gene names: 221633814
Gene position: 1851468-1850548 (Counterclockwise)
Preceding gene: 221633820
Following gene: 221633813
Centisome position: 92.43
GC content: 65.26
Gene sequence:
>921_bases ATGGCTCGTTACGTCGCCTACCGATTGCTGCGCGCGCTGATCACGATCTGGATCGTGGTCACGCTGGTCTTCATCGGGCT CCGACTGTCCGGAGACCCAGCACAAGCCTTGCTCGGGCCAGAAGCTTCGAGCGAGGCAGTGGCCGCGTTGCGCCAGGCGT GGGGGATCGACGAGCCACTCGCCGTGCAGTACACCCGCTATCTCCAGCAACTCGCCCGCGGGGACTTCGGACGCTCGCTC CGCGATCAGCGCCCAGCGACTGTCGTCGTGCACGAACGAATCCCGAGTACGTTACGGCTGGCCAGCGCTGCCCTGGCCAT CGCCTTGAGCGCCGGAACCGTGCTCGGCACACTGGCAGCGCTGCGAGCGGGAAGCCTTCTGGATCGCACGATCGTCGCTC TGTCGGCGATCGGACAGGGCATCCCGAACTTCGTCCTCGGTCTGCTGCTGATTTTGCTCTTCGCGCTGCACCTCGGGTGG TTTCCGACGTCGGGTCAACAAGGAGCAGCGAGCCTTGTGCTGCCGGCGCTCACCTTGAGCAGCTTCAGCGTCGCGAGCCT GACGCGCTTCACGCGCTCGGCTCTGCTCGAAGTCCTGCGGGCCGATTACGTTCGCACTGCCCATGCCAAGGGCTTGCCCT GGCGGACCGTGCTGATCGACCACATGGGGCGCAATGCTGCGCTGACCCTGGTAACGGTCATCAGCTTGCAGGTGGCAGTG GCGATCGCGGGAGCGGTCGTGACCGAGACCGTCTTTTCTTGGCCCGGGATGGGCCAACTCTTGGCTCGAGCCGCCGAACT GCGCGACTTCCCGGTCGTCCAGTACGGCGTTCTGCTTATCGTGGCCTCGGTGGTGTTGGTCAACCTCCTGACCGACATCC TGTACGGCTGGCTCGATCCTCGCGTGCGGCTGGAGGCATGA
Upstream 100 bases:
>100_bases CGACACCTCGCTCCGCAACAAGAATGCCAAAGCCGTTTTACACCGGTGCCACAGTGCAGCGCCCGTACAGGAGAAGACTC GACCCGGAAAGGGGCGCGCG
Downstream 100 bases:
>100_bases GCGATGGTCGTTTCGACTCCTCTCCGACGGTCCGGTTCTCGAGCAGGACTTCCCGTCGTACCCCGCCGTACCCGTGCGCG GCCCGACTGGCCGCTGACCT
Product: putative transport system permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MARYVAYRLLRALITIWIVVTLVFIGLRLSGDPAQALLGPEASSEAVAALRQAWGIDEPLAVQYTRYLQQLARGDFGRSL RDQRPATVVVHERIPSTLRLASAALAIALSAGTVLGTLAALRAGSLLDRTIVALSAIGQGIPNFVLGLLLILLFALHLGW FPTSGQQGAASLVLPALTLSSFSVASLTRFTRSALLEVLRADYVRTAHAKGLPWRTVLIDHMGRNAALTLVTVISLQVAV AIAGAVVTETVFSWPGMGQLLARAAELRDFPVVQYGVLLIVASVVLVNLLTDILYGWLDPRVRLEA
Sequences:
>Translated_306_residues MARYVAYRLLRALITIWIVVTLVFIGLRLSGDPAQALLGPEASSEAVAALRQAWGIDEPLAVQYTRYLQQLARGDFGRSL RDQRPATVVVHERIPSTLRLASAALAIALSAGTVLGTLAALRAGSLLDRTIVALSAIGQGIPNFVLGLLLILLFALHLGW FPTSGQQGAASLVLPALTLSSFSVASLTRFTRSALLEVLRADYVRTAHAKGLPWRTVLIDHMGRNAALTLVTVISLQVAV AIAGAVVTETVFSWPGMGQLLARAAELRDFPVVQYGVLLIVASVVLVNLLTDILYGWLDPRVRLEA >Mature_305_residues ARYVAYRLLRALITIWIVVTLVFIGLRLSGDPAQALLGPEASSEAVAALRQAWGIDEPLAVQYTRYLQQLARGDFGRSLR DQRPATVVVHERIPSTLRLASAALAIALSAGTVLGTLAALRAGSLLDRTIVALSAIGQGIPNFVLGLLLILLFALHLGWF PTSGQQGAASLVLPALTLSSFSVASLTRFTRSALLEVLRADYVRTAHAKGLPWRTVLIDHMGRNAALTLVTVISLQVAVA IAGAVVTETVFSWPGMGQLLARAAELRDFPVVQYGVLLIVASVVLVNLLTDILYGWLDPRVRLEA
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=306, Percent_Identity=38.562091503268, Blast_Score=222, Evalue=3e-59, Organism=Escherichia coli, GI1789965, Length=317, Percent_Identity=38.4858044164038, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=33.8762214983713, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1789888, Length=307, Percent_Identity=34.5276872964169, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=36.9426751592357, Blast_Score=147, Evalue=9e-37, Organism=Escherichia coli, GI1787550, Length=313, Percent_Identity=28.4345047923323, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1788504, Length=281, Percent_Identity=29.5373665480427, Blast_Score=112, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 32815; Mature: 32684
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARYVAYRLLRALITIWIVVTLVFIGLRLSGDPAQALLGPEASSEAVAALRQAWGIDEPL CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCH AVQYTRYLQQLARGDFGRSLRDQRPATVVVHERIPSTLRLASAALAIALSAGTVLGTLAA HHHHHHHHHHHHCCCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LRAGSLLDRTIVALSAIGQGIPNFVLGLLLILLFALHLGWFPTSGQQGAASLVLPALTLS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH SFSVASLTRFTRSALLEVLRADYVRTAHAKGLPWRTVLIDHMGRNAALTLVTVISLQVAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH AIAGAVVTETVFSWPGMGQLLARAAELRDFPVVQYGVLLIVASVVLVNLLTDILYGWLDP HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RVRLEA CEEECC >Mature Secondary Structure ARYVAYRLLRALITIWIVVTLVFIGLRLSGDPAQALLGPEASSEAVAALRQAWGIDEPL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCH AVQYTRYLQQLARGDFGRSLRDQRPATVVVHERIPSTLRLASAALAIALSAGTVLGTLAA HHHHHHHHHHHHCCCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LRAGSLLDRTIVALSAIGQGIPNFVLGLLLILLFALHLGWFPTSGQQGAASLVLPALTLS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH SFSVASLTRFTRSALLEVLRADYVRTAHAKGLPWRTVLIDHMGRNAALTLVTVISLQVAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH AIAGAVVTETVFSWPGMGQLLARAAELRDFPVVQYGVLLIVASVVLVNLLTDILYGWLDP HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RVRLEA CEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA