Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221633560

Identifier: 221633560

GI number: 221633560

Start: 1569406

End: 1570875

Strand: Reverse

Name: 221633560

Synonym: trd_1584

Alternate gene names: NA

Gene position: 1570875-1569406 (Counterclockwise)

Preceding gene: 221633561

Following gene: 221633559

Centisome position: 78.43

GC content: 77.62

Gene sequence:

>1470_bases
ATGACGGGCCGGGCGCTCCTGCGCCGGGTGCTGGCCGACCCGCTCGCCTGCTCGCGCCTGCTCCTGCCGGAGCGCGCGCT
GCGCGGCTACCAAGCGGGGCCGGTCGTCGCGGCTGCGGCGATGGTGCTGGCCCGCGCCCGCGGTGACCGCAGCGGGCCGC
ACGCCCAGCTCTGGCTCTTCAGCCGGCAGTCGGGCAAGGACGAGGCGCTGGCCCAGTTCCTGGCCTGGCTCCTCCTGCGC
TTCCACCGCCGGGGCGGCGAGGTGGTGGTGGCGCTCCCCTCCTGGCGGCCACAGGGCGCGCTGGCCCGCGAGCGGCTGCT
GGCGGTGCTGGCTGCACCGCGGCTGGCGGCGCTCCTGGCCGGGTTGGGGCTCGCGCCCGAGGTAGCGGGCGCGCGGGTGG
CGCTGGGGCGCGCGGTGGTGCGCTACGCGTCGGCCGGGCCGAGTGCCAACGTGCGGGGACTGACCGCCTCGCTGCTCCTG
GTCGCCAACGAGGCGCAGGACATCGCGCCGGACCGCTGGGACAGCGCCTTCGCGCCGATGGCCGCCTCGACCGGCGCACC
GGCGCTCTACCTGGGGACGCCCTGGGGGAGCGACTCGCTGCTGGCCCGCGAGCTGCGGTATCTCACCGCGCTCGAGCGGC
AGGACGGGCAGCAGCGGGTCTGGCGGGTACCCTGGACGACAGTGGCAGCGGAACTGCCGGCCTACGGCGACCACGTCCGC
GAGCGGATGGCGCAACTGGGGGCCGGGCATCCGTTCGTCCGCACCGAGTATGGCCTGGAGGAGCTGGCTGGGGAGGGTCG
GCTCTTCCCGCCGGAGCGGCTGGCGCTGGTGCGCGGCGACCACCCGGCGCTCCTGGCGCCCCGCCCGGGCGAGCGCTACG
CGCTCACGGTCGACGTGGCGGGGGAGGACGAGGCGAGCGCTGGGGAGCTGCGCGACGATCCCGGGGCCCGGCGCGACGCG
ACCGCGCTGACGGTGGTGCGAGTGGTGCCGGGAACGCTGCCGCGCTACGAGGCGGTCTGGCGGGCGCGCTGGGTGGGCGC
GCGGCAGGTGCGGCAGCACGAGGCGCTGGTGCAGTTGGCGCGCGCCTGGCGGGCCGAGCGGGTGGTCGTCGACGCGAGCG
GCGTGGGGGCAGGGCTGGCGGCCTTCCTCGAGCACGCGCTGGGGGAGCGGGTGCGGCGGGTCGTCTTCTCGCCGCGGGTG
AAGTCGGAGCTGGGCTGGGCGTTCGTCGGGCTGGTGGAGAGCGGGCGGTACCGGGACTACGCGGTCGACGCGGCGACGCC
GGGGGAACTGGCGGCGCTCGGTGAGGCGTTCCTGGCCGAGCTGGCCAGCCTGCGGTCGGTGGTCGCGCCCGGGCCGGGGC
GGCTGCTGCGCTGGTGGGGCGAGCCGCACGACGACCTGGCGGTGAGCGCAGCGCTGAGCGCGCTCCTGGACGAGGAGGAC
TGGCGGCCGCGCGTCGCGCGCGGTCGCTGA

Upstream 100 bases:

>100_bases
TCGCCCGCTGGGCGGTGGCCACGCTGCTCTTGGCACTGGGAGCGAGCGGCGCCTACGAGACCGCCCGCTTCCTGCGGCGC
GAGCTGGGCGCTGAACGGGG

Downstream 100 bases:

>100_bases
GCGGTGGGATTGGCCGCGCTGCGCGGCGCGGGGCTTGACGGCACCCCTGTCCGCGCGTAGAATACGAACATATGTGCGGA
ATTGGTGCTCGGGGAAGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MTGRALLRRVLADPLACSRLLLPERALRGYQAGPVVAAAAMVLARARGDRSGPHAQLWLFSRQSGKDEALAQFLAWLLLR
FHRRGGEVVVALPSWRPQGALARERLLAVLAAPRLAALLAGLGLAPEVAGARVALGRAVVRYASAGPSANVRGLTASLLL
VANEAQDIAPDRWDSAFAPMAASTGAPALYLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWTTVAAELPAYGDHVR
ERMAQLGAGHPFVRTEYGLEELAGEGRLFPPERLALVRGDHPALLAPRPGERYALTVDVAGEDEASAGELRDDPGARRDA
TALTVVRVVPGTLPRYEAVWRARWVGARQVRQHEALVQLARAWRAERVVVDASGVGAGLAAFLEHALGERVRRVVFSPRV
KSELGWAFVGLVESGRYRDYAVDAATPGELAALGEAFLAELASLRSVVAPGPGRLLRWWGEPHDDLAVSAALSALLDEED
WRPRVARGR

Sequences:

>Translated_489_residues
MTGRALLRRVLADPLACSRLLLPERALRGYQAGPVVAAAAMVLARARGDRSGPHAQLWLFSRQSGKDEALAQFLAWLLLR
FHRRGGEVVVALPSWRPQGALARERLLAVLAAPRLAALLAGLGLAPEVAGARVALGRAVVRYASAGPSANVRGLTASLLL
VANEAQDIAPDRWDSAFAPMAASTGAPALYLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWTTVAAELPAYGDHVR
ERMAQLGAGHPFVRTEYGLEELAGEGRLFPPERLALVRGDHPALLAPRPGERYALTVDVAGEDEASAGELRDDPGARRDA
TALTVVRVVPGTLPRYEAVWRARWVGARQVRQHEALVQLARAWRAERVVVDASGVGAGLAAFLEHALGERVRRVVFSPRV
KSELGWAFVGLVESGRYRDYAVDAATPGELAALGEAFLAELASLRSVVAPGPGRLLRWWGEPHDDLAVSAALSALLDEED
WRPRVARGR
>Mature_488_residues
TGRALLRRVLADPLACSRLLLPERALRGYQAGPVVAAAAMVLARARGDRSGPHAQLWLFSRQSGKDEALAQFLAWLLLRF
HRRGGEVVVALPSWRPQGALARERLLAVLAAPRLAALLAGLGLAPEVAGARVALGRAVVRYASAGPSANVRGLTASLLLV
ANEAQDIAPDRWDSAFAPMAASTGAPALYLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWTTVAAELPAYGDHVRE
RMAQLGAGHPFVRTEYGLEELAGEGRLFPPERLALVRGDHPALLAPRPGERYALTVDVAGEDEASAGELRDDPGARRDAT
ALTVVRVVPGTLPRYEAVWRARWVGARQVRQHEALVQLARAWRAERVVVDASGVGAGLAAFLEHALGERVRRVVFSPRVK
SELGWAFVGLVESGRYRDYAVDAATPGELAALGEAFLAELASLRSVVAPGPGRLLRWWGEPHDDLAVSAALSALLDEEDW
RPRVARGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52829; Mature: 52698

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGRALLRRVLADPLACSRLLLPERALRGYQAGPVVAAAAMVLARARGDRSGPHAQLWLF
CCHHHHHHHHHHCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
SRQSGKDEALAQFLAWLLLRFHRRGGEVVVALPSWRPQGALARERLLAVLAAPRLAALLA
ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
GLGLAPEVAGARVALGRAVVRYASAGPSANVRGLTASLLLVANEAQDIAPDRWDSAFAPM
CCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEHEEEECCHHHCCCCCCCCCCCCC
AASTGAPALYLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWTTVAAELPAYGDHVR
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHCCCCHHHHH
ERMAQLGAGHPFVRTEYGLEELAGEGRLFPPERLALVRGDHPALLAPRPGERYALTVDVA
HHHHHHCCCCCCEECCCCHHHHCCCCCCCCHHHEEEEECCCCEEECCCCCCCEEEEEEEC
GEDEASAGELRDDPGARRDATALTVVRVVPGTLPRYEAVWRARWVGARQVRQHEALVQLA
CCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAWRAERVVVDASGVGAGLAAFLEHALGERVRRVVFSPRVKSELGWAFVGLVESGRYRDY
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHEEHHHCCCCCEE
AVDAATPGELAALGEAFLAELASLRSVVAPGPGRLLRWWGEPHDDLAVSAALSALLDEED
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCC
WRPRVARGR
CCCCCCCCC
>Mature Secondary Structure 
TGRALLRRVLADPLACSRLLLPERALRGYQAGPVVAAAAMVLARARGDRSGPHAQLWLF
CHHHHHHHHHHCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
SRQSGKDEALAQFLAWLLLRFHRRGGEVVVALPSWRPQGALARERLLAVLAAPRLAALLA
ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
GLGLAPEVAGARVALGRAVVRYASAGPSANVRGLTASLLLVANEAQDIAPDRWDSAFAPM
CCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEHEEEECCHHHCCCCCCCCCCCCC
AASTGAPALYLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWTTVAAELPAYGDHVR
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHCCCCHHHHH
ERMAQLGAGHPFVRTEYGLEELAGEGRLFPPERLALVRGDHPALLAPRPGERYALTVDVA
HHHHHHCCCCCCEECCCCHHHHCCCCCCCCHHHEEEEECCCCEEECCCCCCCEEEEEEEC
GEDEASAGELRDDPGARRDATALTVVRVVPGTLPRYEAVWRARWVGARQVRQHEALVQLA
CCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAWRAERVVVDASGVGAGLAAFLEHALGERVRRVVFSPRVKSELGWAFVGLVESGRYRDY
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHEEHHHCCCCCEE
AVDAATPGELAALGEAFLAELASLRSVVAPGPGRLLRWWGEPHDDLAVSAALSALLDEED
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCC
WRPRVARGR
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA