| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633547
Identifier: 221633547
GI number: 221633547
Start: 1555659
End: 1556150
Strand: Reverse
Name: 221633547
Synonym: trd_1571
Alternate gene names: NA
Gene position: 1556150-1555659 (Counterclockwise)
Preceding gene: 221633549
Following gene: 221633546
Centisome position: 77.69
GC content: 67.07
Gene sequence:
>492_bases GTGATCGATCGAGAGCTTTCTGCCCGCCTGCGCCATCGTTCGCGCCAGTCCGGTATCTGGCTGGGCCTGGCGATGGGACT GGCGATCTTCATCGCGCTGGCGGGCTTCGTGTGGATCTACGCACGGCTCGCGCCTGTCTTCAGCGACTTCGTCTCGCGTC TTCCCGCGGTCACGCCGACGGTGACCGGCACTCCAGCCGTGACTCCGGCGGCGCTCGCACCGCGTCCCAGTCCGACTCCG GTAGCGTCACCTGCGGTGACGCCCACGCCGGCGTGGCAGGCGACGCACCGTGTTGCTCAGGGATCGCAAGTCAATTTCCG GGCTGGGCCGGGAACGCAGTACCAGGTCGTCGCTGTCCTGGAACCGGGTACCGAGCTCCGTTTTCTCGGCGAGCAGGAGC AGGTCGGCAACGCGACCTGGCTGCATCTCGAGCTCCCCGATGGACGCGACGGTTGGATCCGGACGGTCGATCTCGAACTG GTTCGGCGTTGA
Upstream 100 bases:
>100_bases CGCGTCGAGTTCGGCACGAGTCTACCGCAGCCTGCGCTATACTGCGCAGCGCGGCCAGCGTGCGCTGGCGCTTCGTGGAG CATCGGTCCGGAGCGAGACG
Downstream 100 bases:
>100_bases TATGATAGGATCGAACGGCGTGGACACGGCGGTCAGGCGGCCAGCAGCCGATCCCTGCTCCGGAGCAGAGCACCTCTCGG GCCGGCGCGCGTCTCGACGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MIDRELSARLRHRSRQSGIWLGLAMGLAIFIALAGFVWIYARLAPVFSDFVSRLPAVTPTVTGTPAVTPAALAPRPSPTP VASPAVTPTPAWQATHRVAQGSQVNFRAGPGTQYQVVAVLEPGTELRFLGEQEQVGNATWLHLELPDGRDGWIRTVDLEL VRR
Sequences:
>Translated_163_residues MIDRELSARLRHRSRQSGIWLGLAMGLAIFIALAGFVWIYARLAPVFSDFVSRLPAVTPTVTGTPAVTPAALAPRPSPTP VASPAVTPTPAWQATHRVAQGSQVNFRAGPGTQYQVVAVLEPGTELRFLGEQEQVGNATWLHLELPDGRDGWIRTVDLEL VRR >Mature_163_residues MIDRELSARLRHRSRQSGIWLGLAMGLAIFIALAGFVWIYARLAPVFSDFVSRLPAVTPTVTGTPAVTPAALAPRPSPTP VASPAVTPTPAWQATHRVAQGSQVNFRAGPGTQYQVVAVLEPGTELRFLGEQEQVGNATWLHLELPDGRDGWIRTVDLEL VRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17728; Mature: 17728
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDRELSARLRHRSRQSGIWLGLAMGLAIFIALAGFVWIYARLAPVFSDFVSRLPAVTPT CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VTGTPAVTPAALAPRPSPTPVASPAVTPTPAWQATHRVAQGSQVNFRAGPGTQYQVVAVL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCEEEEEEE EPGTELRFLGEQEQVGNATWLHLELPDGRDGWIRTVDLELVRR CCCCCEEEECCHHHCCCEEEEEEECCCCCCCCEEEEEHEECCC >Mature Secondary Structure MIDRELSARLRHRSRQSGIWLGLAMGLAIFIALAGFVWIYARLAPVFSDFVSRLPAVTPT CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VTGTPAVTPAALAPRPSPTPVASPAVTPTPAWQATHRVAQGSQVNFRAGPGTQYQVVAVL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCEEEEEEE EPGTELRFLGEQEQVGNATWLHLELPDGRDGWIRTVDLELVRR CCCCCEEEECCHHHCCCEEEEEEECCCCCCCCEEEEEHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA