Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is yfcE [C]

Identifier: 221633459

GI number: 221633459

Start: 1466984

End: 1467715

Strand: Reverse

Name: yfcE [C]

Synonym: trd_1481

Alternate gene names: 221633459

Gene position: 1467715-1466984 (Counterclockwise)

Preceding gene: 221633466

Following gene: 221633458

Centisome position: 73.28

GC content: 64.89

Gene sequence:

>732_bases
ATGCGCGTTCTCGTCGTCTCGGACATCCACGGCAACCTGGAAGCGTTGGAAGCGGTCCTCGCAGCGGCTGGCCCGGTGGA
TCGTGTCTGGTGTTTGGGGGATGTCGTTGGGTACGGCCCGCGGCCGCGCGAGTGCGTCGAACGCATCCGGGAAGTCGCCG
GCCCGGCGACCGTGCTGGGGAACCACGATGCCGCTTGCTCAGGACGCTTACCGCTGGAGGGCTTCAACCCGGCCGCTCGC
TACGCCTTGCGCTGGACGATGCTGCAGCTGGGAACCGAGCACCGTGCCTTTTTGGAGAACTTGCCTGAGAAGCTGGTTCT
CGACGAAGTGACGCTGGTGCACGGGAGCCTGCGGGCACCGATATGGGAGTACGTGTTCACGACGGAGCAAGCACGGGCGA
ATTTCCGGCTGCTCGAAACGCGCTTGTGCTTCTTCGGACACACGCACGTGCCGTTTCTGTTGAGCGAGGAAGCAGCGCAG
CGGGGTGAGCGACCACTGCAGCCGTCGGATGGGATGGTCATCGACACGCGTGAGGGGCGTCTGCTGGTGAACCCGGGATC
AGTGGGGCAGCCGAGGGATGGGGATCCTCGGGCTGCCTTTCTGCTTTGGGAGCCAGAGGCGCAGCGTCTCACTTTTCGGC
GCGTGCCGTACAATATCGAAGCGGTGCAGGCCGAGATGGCGGCGGCGAGACTCCCCCAGCTCTTGATCGAACGTCTCGCG
CTGGGCCTTTGA

Upstream 100 bases:

>100_bases
AGCGGTGGCTCGGCGCCGAAAAAGCGTGTGACCGACCGGTGCGAGCGCGCTCGTCTCGCCGTACTGGCGTGCTTGGAGTA
CCCTCGAAAGGAGAGGAGCG

Downstream 100 bases:

>100_bases
CCGCGCGTCGCGATGAGACTGGAGGGGAAACGTGGCACGAGTCTACCGCCGGGTGGTCGTCCCGGTGAGTGGTTCACCAG
ACGACGAGCGGGCGATCGAC

Product: phosphatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRVLVVSDIHGNLEALEAVLAAAGPVDRVWCLGDVVGYGPRPRECVERIREVAGPATVLGNHDAACSGRLPLEGFNPAAR
YALRWTMLQLGTEHRAFLENLPEKLVLDEVTLVHGSLRAPIWEYVFTTEQARANFRLLETRLCFFGHTHVPFLLSEEAAQ
RGERPLQPSDGMVIDTREGRLLVNPGSVGQPRDGDPRAAFLLWEPEAQRLTFRRVPYNIEAVQAEMAAARLPQLLIERLA
LGL

Sequences:

>Translated_243_residues
MRVLVVSDIHGNLEALEAVLAAAGPVDRVWCLGDVVGYGPRPRECVERIREVAGPATVLGNHDAACSGRLPLEGFNPAAR
YALRWTMLQLGTEHRAFLENLPEKLVLDEVTLVHGSLRAPIWEYVFTTEQARANFRLLETRLCFFGHTHVPFLLSEEAAQ
RGERPLQPSDGMVIDTREGRLLVNPGSVGQPRDGDPRAAFLLWEPEAQRLTFRRVPYNIEAVQAEMAAARLPQLLIERLA
LGL
>Mature_243_residues
MRVLVVSDIHGNLEALEAVLAAAGPVDRVWCLGDVVGYGPRPRECVERIREVAGPATVLGNHDAACSGRLPLEGFNPAAR
YALRWTMLQLGTEHRAFLENLPEKLVLDEVTLVHGSLRAPIWEYVFTTEQARANFRLLETRLCFFGHTHVPFLLSEEAAQ
RGERPLQPSDGMVIDTREGRLLVNPGSVGQPRDGDPRAAFLLWEPEAQRLTFRRVPYNIEAVQAEMAAARLPQLLIERLA
LGL

Specific function: Unknown

COG id: COG0639

COG function: function code T; Diadenosine tetraphosphatase and related serine/threonine protein phosphatases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR011152 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: NA

Molecular weight: Translated: 27029; Mature: 27029

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLVVSDIHGNLEALEAVLAAAGPVDRVWCLGDVVGYGPRPRECVERIREVAGPATVLG
CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEC
NHDAACSGRLPLEGFNPAARYALRWTMLQLGTEHRAFLENLPEKLVLDEVTLVHGSLRAP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCCC
IWEYVFTTEQARANFRLLETRLCFFGHTHVPFLLSEEAAQRGERPLQPSDGMVIDTREGR
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECHHHHHCCCCCCCCCCCEEEECCCCE
LLVNPGSVGQPRDGDPRAAFLLWEPEAQRLTFRRVPYNIEAVQAEMAAARLPQLLIERLA
EEECCCCCCCCCCCCCCEEEEEECCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LGL
HCC
>Mature Secondary Structure
MRVLVVSDIHGNLEALEAVLAAAGPVDRVWCLGDVVGYGPRPRECVERIREVAGPATVLG
CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEC
NHDAACSGRLPLEGFNPAARYALRWTMLQLGTEHRAFLENLPEKLVLDEVTLVHGSLRAP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCCC
IWEYVFTTEQARANFRLLETRLCFFGHTHVPFLLSEEAAQRGERPLQPSDGMVIDTREGR
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECHHHHHCCCCCCCCCCCEEEECCCCE
LLVNPGSVGQPRDGDPRAAFLLWEPEAQRLTFRRVPYNIEAVQAEMAAARLPQLLIERLA
EEECCCCCCCCCCCCCCEEEEEECCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LGL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]