| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633458
Identifier: 221633458
GI number: 221633458
Start: 1466494
End: 1466931
Strand: Reverse
Name: 221633458
Synonym: trd_1480
Alternate gene names: NA
Gene position: 1466931-1466494 (Counterclockwise)
Preceding gene: 221633459
Following gene: 221633457
Centisome position: 73.24
GC content: 64.16
Gene sequence:
>438_bases GTGGTCGTCCCGGTGAGTGGTTCACCAGACGACGAGCGGGCGATCGACCTGGCGGCAGCAGTCTGTACTGGCAGCGAGAC GACGCTCATCCTCGTGTATGTGGTCGAGGTCCCACAACGGTATGCCTTGGATGTCGAGTTGCCCGAGCAGATCGAGCGGG GGTCAGCGATCCTGGAGCGAGCAGCGCAGTACGCACAGCGTGTCGCGCGCGGGAAGTGGAAACGGGTACTGACCGAGCTT CTGCAGGCACGCGTGGCTGGTGCGGCGATCGTCGACGAGGCGATCGAACGCGCGGCCGATGCCATCATCATGGCGACGAG GAGCCGTTGGACCTTGGGTGTCCTGACGCAGGGAGAGACGCTTCCGTATATCCTTGACAATGCTCCGTGCGACGTCGTCG TCGTACGGGTCGCTGAGCGGGGTGAGGCAGCATCGTGA
Upstream 100 bases:
>100_bases GCGAGACTCCCCCAGCTCTTGATCGAACGTCTCGCGCTGGGCCTTTGACCGCGCGTCGCGATGAGACTGGAGGGGAAACG TGGCACGAGTCTACCGCCGG
Downstream 100 bases:
>100_bases AGATCGTCATCGTCGGTTGTGGCCGCGTCGGGGCGAAACTGGCGAGCGATTTCGCTGAGGAAGGGCATCAGGTCTCGGTC GTCGACCAGCGACAGACGGC
Product: universal stress protein family
Products: NA
Alternate protein names: Universal Stress Protein Family; UspA Domain-Containing Protein
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MVVPVSGSPDDERAIDLAAAVCTGSETTLILVYVVEVPQRYALDVELPEQIERGSAILERAAQYAQRVARGKWKRVLTEL LQARVAGAAIVDEAIERAADAIIMATRSRWTLGVLTQGETLPYILDNAPCDVVVVRVAERGEAAS
Sequences:
>Translated_145_residues MVVPVSGSPDDERAIDLAAAVCTGSETTLILVYVVEVPQRYALDVELPEQIERGSAILERAAQYAQRVARGKWKRVLTEL LQARVAGAAIVDEAIERAADAIIMATRSRWTLGVLTQGETLPYILDNAPCDVVVVRVAERGEAAS >Mature_145_residues MVVPVSGSPDDERAIDLAAAVCTGSETTLILVYVVEVPQRYALDVELPEQIERGSAILERAAQYAQRVARGKWKRVLTEL LQARVAGAAIVDEAIERAADAIIMATRSRWTLGVLTQGETLPYILDNAPCDVVVVRVAERGEAAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15659; Mature: 15659
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVPVSGSPDDERAIDLAAAVCTGSETTLILVYVVEVPQRYALDVELPEQIERGSAILER CEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCCHHHHHHHHHHHHH AAQYAQRVARGKWKRVLTELLQARVAGAAIVDEAIERAADAIIMATRSRWTLGVLTQGET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCC LPYILDNAPCDVVVVRVAERGEAAS CCEEECCCCCCEEEEEEECCCCCCC >Mature Secondary Structure MVVPVSGSPDDERAIDLAAAVCTGSETTLILVYVVEVPQRYALDVELPEQIERGSAILER CEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCCHHHHHHHHHHHHH AAQYAQRVARGKWKRVLTELLQARVAGAAIVDEAIERAADAIIMATRSRWTLGVLTQGET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCC LPYILDNAPCDVVVVRVAERGEAAS CCEEECCCCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA