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The map label for this gene is ydjE [C]

Identifier: 221633296

GI number: 221633296

Start: 1306996

End: 1308609

Strand: Reverse

Name: ydjE [C]

Synonym: trd_1316

Alternate gene names: 221633296

Gene position: 1308609-1306996 (Counterclockwise)

Preceding gene: 221633297

Following gene: 221633292

Centisome position: 65.33

GC content: 57.81

Gene sequence:

>1614_bases
ATGAGTGGGATGGCGGCAGGGCGAAGTTGGGGACGACCACGGACCTTTGTCCGCGAGGCGACAGGTCTGACGAAGGAGCT
TTCGCTCCTCGATATTTTTGTCTACAACACGAACAACCAGAACATCGGTTTAGGCGTGCTCTTCATCCTCCTGTTCGTTC
CTGCATTCTATCCGGGGGCCAGCATGCTCGGCGGTGTCCTGGTCGCTGGGCTGTTGGCTCTCGCCCACGCAACGACGTAC
GCCTTTTTCGCGGCTGCTCTCCCGCGGAGTGGTGGCGACTATGTGTACATCAGCCGGACCTTGTCTCCTCTCCTCGGCTT
CATCAGTAGCTTCAACTGGCTGGTCTGGTTGAGCGTGTACATCGGCATTCCGGCAGCATACTTTGGGCAGTATGGCTTAT
CCTCGCTCTTTCGTCTGCTCGCGGCCCACTACCGCAATCCGGATCTCATGCGTTTCGCCGATTTCTGGCAGACGCCGCTC
GGCATCTTCGTCGCGGGGACCGTACTCATTGTCGTTTTTGGGAGCATCTTTGCACTCGGGACCAAGATCTATTTCCGGAT
ACAGAATGTCGCCTTTGCGTTCGCGACGCTCGCTGTGGCTGTGGCTGGTCTCGTCGCTCTCCTGACGAGCCGGGAGACGT
TCATCGCCCGGTTCGATGAATACGTGCGAGCAGTGGGTGGTGTCGAAAATGCCTTCCAAGTCGCATGGGAGAGTTCGGGA
TATCAATGGCACCCGTTCGATGCGTATCAGACCTTCCTCTCGCTCAGCTTGCCGCTTTACATTGTGCTGTACGCCATCAC
TTCCAGCTTCATCGGTGGTGAGGTGAAGAACGCGCGCCGGGCGCAATTTTTTGGCATGCCGGGTTCTGTTGTCTACTGCA
CGGTGTGGATCGTGCTCCTCATCGCGGCTTTTCAGAAGATGGTGGGGTATGACGGATTGGGAGCCATCGGTGCTGCCGAT
CCGGCTGCTCTCGGACTCGCCTTCACGCCCACCTTCGTCGAGTTGGCAGGCGCGGTGGTGCACCACAATCTCCTCTTGAT
CCTTCTCATCGGGCTGGGCTTCCTGCTCTGGACCTACGTTTGGTTGCCTATCAATTATCTCGCGTCGACGCGTATCTTGT
TGGCCTGGTCGTTTGACCGACTGATGCCGGAGATACTCTCGTACGTCAGTCCACGGACGCATACACCATTGGTCGCTATC
CTGGTCGTGGGGATCCTGGGGGAGATTTGCTTGGCGCTCTACGCGTGGCATATCGTTCTCGCCAGTATCGTGGGGATCTT
CGGCTGGATCGTCTCCTTCATTCTCACTGCGATCGCCGCGATCGTTTTCCCGTATCGGAGGCGCGAGGATTTTGAGGCAT
CGCCGGTACGCTGGCGTGTGGCTGGATTACCGGTCATGTCGATCGTTGGTCTTCTCGCGGTGATCAGTTTGCTCATCTGT
GAGGTCGTGTTCTGGCTGGATCCCTTCGTCGGGCTTGCCCATTTCCCCAACGTCCAAATCTTGACCGTCGGTGTCTTCAT
CGCCGGGGCGCTGGTGTACTGGATCGCCAAAACGGTCCAGGCGCGCCGGGGTATCCATATCGAGTACGCATTTCGGGAAA
TACCACCTGAGTGA

Upstream 100 bases:

>100_bases
TTACGCGATCGCCCGCTGGTGGCGGGCTCGCCAGGGCATCGATCTCTCGCTCGCCTATCGCGAGATCCCGGTCGAGTGAA
AGAGACTCGAGGAGGAGGCG

Downstream 100 bases:

>100_bases
GGCGAACATGAAGCCGGCTGGACTGGAGACGGTTGCCATTCAGCCGGCGTCACATGTCAGTCTGCTGCCAGGCCTGGGGC
CCACGCGGCAGCGCGTTCGC

Product: Amino acid permease superfamily

Products: NA

Alternate protein names: Amino Acid Transporter; Amino Acid Transporter-Like Protein; Amino Acid Permease Superfamily

Number of amino acids: Translated: 537; Mature: 536

Protein sequence:

>537_residues
MSGMAAGRSWGRPRTFVREATGLTKELSLLDIFVYNTNNQNIGLGVLFILLFVPAFYPGASMLGGVLVAGLLALAHATTY
AFFAAALPRSGGDYVYISRTLSPLLGFISSFNWLVWLSVYIGIPAAYFGQYGLSSLFRLLAAHYRNPDLMRFADFWQTPL
GIFVAGTVLIVVFGSIFALGTKIYFRIQNVAFAFATLAVAVAGLVALLTSRETFIARFDEYVRAVGGVENAFQVAWESSG
YQWHPFDAYQTFLSLSLPLYIVLYAITSSFIGGEVKNARRAQFFGMPGSVVYCTVWIVLLIAAFQKMVGYDGLGAIGAAD
PAALGLAFTPTFVELAGAVVHHNLLLILLIGLGFLLWTYVWLPINYLASTRILLAWSFDRLMPEILSYVSPRTHTPLVAI
LVVGILGEICLALYAWHIVLASIVGIFGWIVSFILTAIAAIVFPYRRREDFEASPVRWRVAGLPVMSIVGLLAVISLLIC
EVVFWLDPFVGLAHFPNVQILTVGVFIAGALVYWIAKTVQARRGIHIEYAFREIPPE

Sequences:

>Translated_537_residues
MSGMAAGRSWGRPRTFVREATGLTKELSLLDIFVYNTNNQNIGLGVLFILLFVPAFYPGASMLGGVLVAGLLALAHATTY
AFFAAALPRSGGDYVYISRTLSPLLGFISSFNWLVWLSVYIGIPAAYFGQYGLSSLFRLLAAHYRNPDLMRFADFWQTPL
GIFVAGTVLIVVFGSIFALGTKIYFRIQNVAFAFATLAVAVAGLVALLTSRETFIARFDEYVRAVGGVENAFQVAWESSG
YQWHPFDAYQTFLSLSLPLYIVLYAITSSFIGGEVKNARRAQFFGMPGSVVYCTVWIVLLIAAFQKMVGYDGLGAIGAAD
PAALGLAFTPTFVELAGAVVHHNLLLILLIGLGFLLWTYVWLPINYLASTRILLAWSFDRLMPEILSYVSPRTHTPLVAI
LVVGILGEICLALYAWHIVLASIVGIFGWIVSFILTAIAAIVFPYRRREDFEASPVRWRVAGLPVMSIVGLLAVISLLIC
EVVFWLDPFVGLAHFPNVQILTVGVFIAGALVYWIAKTVQARRGIHIEYAFREIPPE
>Mature_536_residues
SGMAAGRSWGRPRTFVREATGLTKELSLLDIFVYNTNNQNIGLGVLFILLFVPAFYPGASMLGGVLVAGLLALAHATTYA
FFAAALPRSGGDYVYISRTLSPLLGFISSFNWLVWLSVYIGIPAAYFGQYGLSSLFRLLAAHYRNPDLMRFADFWQTPLG
IFVAGTVLIVVFGSIFALGTKIYFRIQNVAFAFATLAVAVAGLVALLTSRETFIARFDEYVRAVGGVENAFQVAWESSGY
QWHPFDAYQTFLSLSLPLYIVLYAITSSFIGGEVKNARRAQFFGMPGSVVYCTVWIVLLIAAFQKMVGYDGLGAIGAADP
AALGLAFTPTFVELAGAVVHHNLLLILLIGLGFLLWTYVWLPINYLASTRILLAWSFDRLMPEILSYVSPRTHTPLVAIL
VVGILGEICLALYAWHIVLASIVGIFGWIVSFILTAIAAIVFPYRRREDFEASPVRWRVAGLPVMSIVGLLAVISLLICE
VVFWLDPFVGLAHFPNVQILTVGVFIAGALVYWIAKTVQARRGIHIEYAFREIPPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59008; Mature: 58877

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGMAAGRSWGRPRTFVREATGLTKELSLLDIFVYNTNNQNIGLGVLFILLFVPAFYPGA
CCCCCCCCCCCCCHHHHHHHHCCHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCH
SMLGGVLVAGLLALAHATTYAFFAAALPRSGGDYVYISRTLSPLLGFISSFNWLVWLSVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
IGIPAAYFGQYGLSSLFRLLAAHYRNPDLMRFADFWQTPLGIFVAGTVLIVVFGSIFALG
HHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TKIYFRIQNVAFAFATLAVAVAGLVALLTSRETFIARFDEYVRAVGGVENAFQVAWESSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
YQWHPFDAYQTFLSLSLPLYIVLYAITSSFIGGEVKNARRAQFFGMPGSVVYCTVWIVLL
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHCCCCCHHHHHHHHHHHH
IAAFQKMVGYDGLGAIGAADPAALGLAFTPTFVELAGAVVHHNLLLILLIGLGFLLWTYV
HHHHHHHHCCCCCCCCCCCCHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLPINYLASTRILLAWSFDRLMPEILSYVSPRTHTPLVAILVVGILGEICLALYAWHIVL
HHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ASIVGIFGWIVSFILTAIAAIVFPYRRREDFEASPVRWRVAGLPVMSIVGLLAVISLLIC
HHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
EVVFWLDPFVGLAHFPNVQILTVGVFIAGALVYWIAKTVQARRGIHIEYAFREIPPE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCC
>Mature Secondary Structure 
SGMAAGRSWGRPRTFVREATGLTKELSLLDIFVYNTNNQNIGLGVLFILLFVPAFYPGA
CCCCCCCCCCCCHHHHHHHHCCHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCH
SMLGGVLVAGLLALAHATTYAFFAAALPRSGGDYVYISRTLSPLLGFISSFNWLVWLSVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
IGIPAAYFGQYGLSSLFRLLAAHYRNPDLMRFADFWQTPLGIFVAGTVLIVVFGSIFALG
HHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TKIYFRIQNVAFAFATLAVAVAGLVALLTSRETFIARFDEYVRAVGGVENAFQVAWESSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
YQWHPFDAYQTFLSLSLPLYIVLYAITSSFIGGEVKNARRAQFFGMPGSVVYCTVWIVLL
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHCCCCCHHHHHHHHHHHH
IAAFQKMVGYDGLGAIGAADPAALGLAFTPTFVELAGAVVHHNLLLILLIGLGFLLWTYV
HHHHHHHHCCCCCCCCCCCCHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLPINYLASTRILLAWSFDRLMPEILSYVSPRTHTPLVAILVVGILGEICLALYAWHIVL
HHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ASIVGIFGWIVSFILTAIAAIVFPYRRREDFEASPVRWRVAGLPVMSIVGLLAVISLLIC
HHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
EVVFWLDPFVGLAHFPNVQILTVGVFIAGALVYWIAKTVQARRGIHIEYAFREIPPE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA