| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221633283
Identifier: 221633283
GI number: 221633283
Start: 1294854
End: 1295678
Strand: Reverse
Name: 221633283
Synonym: trd_1302
Alternate gene names: NA
Gene position: 1295678-1294854 (Counterclockwise)
Preceding gene: 221633284
Following gene: 221633281
Centisome position: 64.69
GC content: 64.48
Gene sequence:
>825_bases ATGAGCGGAATGAGTACCGACGAGTTGGTCGCGCTCGCATTGGACATGGCGAACATGCGGCGCCTGCCCGCGGACAGCGA GGTCTACGTGCCGGGTGCACGAATCCGCCGGCTTTTCGTCGCGCTCGATGTCGGGACAGCCGAGCTGCTCGTGGCCCGGG ATATCGGTTGCGATGGCGTCTTGGCTCATCATCCAGCCGGCGGGCGGGCAGTTCTCCGCTTTCCCGAAGTGTTGACCCGC CATGTCGAACTCATGGTCGAGCACGGTGTCGATCCAGCGGCTGCCAAGGCTGCGTTGCAACCCTTATTCGCGCGTGCGAT TCTTCGTGCACAAGCGGCGAACTACGATCAGGTTCCCGCTGTGGCTCGCTTGTTTGGCATCCCCTTCCTGAACTTGCATT TGCCTCTCGACGAGATCGGTCGTCGGGTAATGGTCGAAACGATCGAGCGCTACCGGACGACGCTTGGCCGCGAGTCGACG GTACAGGATGTGATCGATGCGCTGCGGACGCTGCCCGAGTTCGGCGAGAGTGCGGTGCCGATCATGGTTCCGGTGGGGGC GGTCGATCGGCCGGCGCGTCGCGTCGCGGTCGTGCATGGGGCAGGGACCAACGGCGGTGCATCCGTCGCGCAAGCCTATT TCGCGCACGGCGTGGATACGGTCGTGTATCTCCATTTGGCCCCGGAGGAGGTCGAGCGACTCCGCAGCGGCGCCTCCGGT TCGGTCATCGTCGTCGGTCATGTCCCCGGTGACCAGGTCGGCCTCAACCGATACCTGGCTGAAGTCGAGCGACGGGGCGT CGAGATCGTTCGCGCCGGCATTTAG
Upstream 100 bases:
>100_bases ATGTCGCCAGCGCGAGTTTCCTCTGCGGCTCGACGACCAGCGGTGCCGGTCGCCGACAGCGGGCCTGTGCGACAATCGCG GGGAAGGAGGGCGAGAAGCG
Downstream 100 bases:
>100_bases CGACCGAACACGTTGGCGATGCGGTCGAGCGCCCGCTCCAGGAGCTCGTCAGCGGTCGCGAAACTCAGGCGAATACAACC GGAGCCGGAGGCACCGAACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSGMSTDELVALALDMANMRRLPADSEVYVPGARIRRLFVALDVGTAELLVARDIGCDGVLAHHPAGGRAVLRFPEVLTR HVELMVEHGVDPAAAKAALQPLFARAILRAQAANYDQVPAVARLFGIPFLNLHLPLDEIGRRVMVETIERYRTTLGREST VQDVIDALRTLPEFGESAVPIMVPVGAVDRPARRVAVVHGAGTNGGASVAQAYFAHGVDTVVYLHLAPEEVERLRSGASG SVIVVGHVPGDQVGLNRYLAEVERRGVEIVRAGI
Sequences:
>Translated_274_residues MSGMSTDELVALALDMANMRRLPADSEVYVPGARIRRLFVALDVGTAELLVARDIGCDGVLAHHPAGGRAVLRFPEVLTR HVELMVEHGVDPAAAKAALQPLFARAILRAQAANYDQVPAVARLFGIPFLNLHLPLDEIGRRVMVETIERYRTTLGREST VQDVIDALRTLPEFGESAVPIMVPVGAVDRPARRVAVVHGAGTNGGASVAQAYFAHGVDTVVYLHLAPEEVERLRSGASG SVIVVGHVPGDQVGLNRYLAEVERRGVEIVRAGI >Mature_273_residues SGMSTDELVALALDMANMRRLPADSEVYVPGARIRRLFVALDVGTAELLVARDIGCDGVLAHHPAGGRAVLRFPEVLTRH VELMVEHGVDPAAAKAALQPLFARAILRAQAANYDQVPAVARLFGIPFLNLHLPLDEIGRRVMVETIERYRTTLGRESTV QDVIDALRTLPEFGESAVPIMVPVGAVDRPARRVAVVHGAGTNGGASVAQAYFAHGVDTVVYLHLAPEEVERLRSGASGS VIVVGHVPGDQVGLNRYLAEVERRGVEIVRAGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29391; Mature: 29260
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGMSTDELVALALDMANMRRLPADSEVYVPGARIRRLFVALDVGTAELLVARDIGCDGV CCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHEEECCHHHEEEEECCCCCCE LAHHPAGGRAVLRFPEVLTRHVELMVEHGVDPAAAKAALQPLFARAILRAQAANYDQVPA EEECCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH VARLFGIPFLNLHLPLDEIGRRVMVETIERYRTTLGRESTVQDVIDALRTLPEFGESAVP HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC IMVPVGAVDRPARRVAVVHGAGTNGGASVAQAYFAHGVDTVVYLHLAPEEVERLRSGASG EEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCC SVIVVGHVPGDQVGLNRYLAEVERRGVEIVRAGI CEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCC >Mature Secondary Structure SGMSTDELVALALDMANMRRLPADSEVYVPGARIRRLFVALDVGTAELLVARDIGCDGV CCCCHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHEEECCHHHEEEEECCCCCCE LAHHPAGGRAVLRFPEVLTRHVELMVEHGVDPAAAKAALQPLFARAILRAQAANYDQVPA EEECCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH VARLFGIPFLNLHLPLDEIGRRVMVETIERYRTTLGRESTVQDVIDALRTLPEFGESAVP HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC IMVPVGAVDRPARRVAVVHGAGTNGGASVAQAYFAHGVDTVVYLHLAPEEVERLRSGASG EEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCC SVIVVGHVPGDQVGLNRYLAEVERRGVEIVRAGI CEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA