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The map label for this gene is yqfG [H]

Identifier: 221633270

GI number: 221633270

Start: 1281720

End: 1282217

Strand: Reverse

Name: yqfG [H]

Synonym: trd_1289

Alternate gene names: 221633270

Gene position: 1282217-1281720 (Counterclockwise)

Preceding gene: 221633271

Following gene: 221633266

Centisome position: 64.01

GC content: 63.86

Gene sequence:

>498_bases
ATGAGCTGGCCACTCCGTGTCGGAATTCGCGTCAGCGAGGGGCTCGACCGGCCGGTCTCGGTACGGCGGCTGGCCCGCTT
CCTCCGTTTCGTCGCCGAGCGCGAGGGAGTCACGGGAGAAGTTGGCGTCTGGATTTGCCGCGATGACGAGATCGCCGAAC
TCCACGAGCGGTTCCAGGGAATTCCGGGGCCGACCGATGTCATGAGTTTCCCGGGAGAGCCACCGTACCTCGGTGACATC
GCTGTCTCAGCGGAAACAGCAGCCGTGCAGGGGGCCGAGGTCGGTCACGGCGTGGGACGAGAGATCGCCTTCCTGACCGT
TCATGGCTTCTTGCACTTGATCGGTTACGACGACCTGTCGGAGCCAGAGAGATCGCGTATGTTGGAGCGTCAGGAGGAGC
TGCTCCATGCCTTCGAGTGCGTCGAGCCGGGACGCTGGGAGCCCGTTGCGCGTCAGCGTCGTCATGACGGTCAAAAACGA
GGCGACAACACTGCCTGA

Upstream 100 bases:

>100_bases
TCACCATGCTCGAGGGGGTTTACCACCCACGTGTGGAATATCCGGAAGTTCGCCGCGAGCTGGTCGTGACTGGCGTGGAC
GAGCGGGCGGCGGCCGAGGC

Downstream 100 bases:

>100_bases
GCTTCTCGACTCGCTCATCGGTCAGACACGTCGACCCGACGAAGTCATCGTCGTCGATGGCGGGTCAGACGACGGGACGG
TGGAGGTGCTGGATCGGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MSWPLRVGIRVSEGLDRPVSVRRLARFLRFVAEREGVTGEVGVWICRDDEIAELHERFQGIPGPTDVMSFPGEPPYLGDI
AVSAETAAVQGAEVGHGVGREIAFLTVHGFLHLIGYDDLSEPERSRMLERQEELLHAFECVEPGRWEPVARQRRHDGQKR
GDNTA

Sequences:

>Translated_165_residues
MSWPLRVGIRVSEGLDRPVSVRRLARFLRFVAEREGVTGEVGVWICRDDEIAELHERFQGIPGPTDVMSFPGEPPYLGDI
AVSAETAAVQGAEVGHGVGREIAFLTVHGFLHLIGYDDLSEPERSRMLERQEELLHAFECVEPGRWEPVARQRRHDGQKR
GDNTA
>Mature_164_residues
SWPLRVGIRVSEGLDRPVSVRRLARFLRFVAEREGVTGEVGVWICRDDEIAELHERFQGIPGPTDVMSFPGEPPYLGDIA
VSAETAAVQGAEVGHGVGREIAFLTVHGFLHLIGYDDLSEPERSRMLERQEELLHAFECVEPGRWEPVARQRRHDGQKRG
DNTA

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18511; Mature: 18380

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWPLRVGIRVSEGLDRPVSVRRLARFLRFVAEREGVTGEVGVWICRDDEIAELHERFQG
CCCCEEECEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCC
IPGPTDVMSFPGEPPYLGDIAVSAETAAVQGAEVGHGVGREIAFLTVHGFLHLIGYDDLS
CCCCHHHHCCCCCCCCCCCEEECCHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCC
EPERSRMLERQEELLHAFECVEPGRWEPVARQRRHDGQKRGDNTA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SWPLRVGIRVSEGLDRPVSVRRLARFLRFVAEREGVTGEVGVWICRDDEIAELHERFQG
CCCEEECEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCC
IPGPTDVMSFPGEPPYLGDIAVSAETAAVQGAEVGHGVGREIAFLTVHGFLHLIGYDDLS
CCCCHHHHCCCCCCCCCCCEEECCHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCC
EPERSRMLERQEELLHAFECVEPGRWEPVARQRRHDGQKRGDNTA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]