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The map label for this gene is yliB [C]

Identifier: 221633237

GI number: 221633237

Start: 1239251

End: 1241188

Strand: Reverse

Name: yliB [C]

Synonym: trd_1255

Alternate gene names: 221633237

Gene position: 1241188-1239251 (Counterclockwise)

Preceding gene: 221633238

Following gene: 221633236

Centisome position: 61.97

GC content: 60.37

Gene sequence:

>1938_bases
ATGGTGAGTCGGTTCGCAGGGTCTGGCGATGGTGGAGTGAAGCGTGAGGAGGGTGAAACGATGGAGACATTGCGGGAACT
CGAAGCGGCAGCACGCTCAGGACAGCTCAGCCGGCGTGACGTGCTCAAACGCGCGGCTGCGTTGGGTGCGAGTGCGCCGG
TGATCGCGAGCCTACTCGCGGCGTGCGCGCGCCAGGAAGCGACACCGACACCAGCGCCCGCAGCACAGACGCCCGCTGCG
GCGACACCAGCTCCAGCGGCGAGCCCGACACCCGCGGCGGCAGCGAGTCCGACCCCGGCCCCAGCTGCGAAGCGTGGGCA
AGGTGGCCTGGTGAAGCTGCTCTGGTGGCAGGCGCCGACGATCCTGAATCCGCACTTGGCGCAGGGATCCAAAGACTTCA
ATGCCTCGCGACTGGTGCTCGAGCCACTGGCCGACATCAACGACAAAGGTGAACTCGTACCGGTTTTGGCAGCAGAAATC
CCCTCGGTCGAGAACGGTGGAGTGAGCAAGGACGCGAAAACGGTTACCTGGAAGCTCAAGAAGGATGTCAAGTGGTCGGA
CGGCCAGCCGTTCACGTCCAAGGACGTGAAGTTTACCTATGAGTATGTCATCGACGAGAAGACGACAGCGACGACGATCG
CGAACTACACAGTGATCGAGTCGATCGAAACGCCGGATGATCATACGGTCGTCATCCGCTTCAAGGACCCGAATCCGGCG
TGGATGAACGTCTTCGTCGGGCCGTACGGGAGGATCCTGCCACAACACATCCTCAAGGACTATGTCGGCGAGAAGGCCCG
TACGGCACCGTTCAACTTGAATCCCATCGGAACGGGTCCCTACAAAGTCAAAGAGTTCAAGCCGGGTGATGTCGTCGTCT
ACGAAATGAACGAGAACTATCGCGAGCCAGACAAACCGTACTTCGCACAGGTCGAGTTCAAGGGTGGCGGTGACGCGACC
ACGGCGGCACGGGCCGTGCTGCAGACCGGTGAAGTCGACTACGCCTGGAACCTGCAGGTCGAGGCGCAGGTGCTCGACCA
GTTGGAAAAGGCGGGTGTCGGTGTCGTCGAGGTCATCGAGGGCGTCTATGTCGAGCGGATCCTGGTGAACATGACCGATC
CGCGCAAGGAGGTCGATGGCGAGCGCTCGAAGCTGGGCGTGCCGCATCCCTGGCAATCTGATCTGCGTGTGCGGCAGGCC
TATGCGCTGGCCTGCCAGCGCGACGTCATCGCCAACACGCTGTATGGGCGAGCTGGGAAAGCCACTTCGAACATCCTGGT
GGCGCCCGAGCGCTTCGTCTCCAAGAACACCTCCTGGAAGTTCGACCTGGATGCCGCGGCCAAGTTGCTCGACGAGGCCG
GCTGGACCAAGGGCCCGGATGGTGTCCGGCAGAAGGACGGAGTGCGGATGGAGGTCGTCTACCAAACGACGATCAATCCG
GTCCGCCAGAAGACGCAGGAGATCATCAAGAGCGCCTTCGAGAAACTCGGCATCAAAGTCGAGCTGAAGTCGATCGAGGC
GTCAGTCTTCTTCTCGTCCGATCCGGGCAATCCCGATACGGCAGCGCACTTCTATGCTGATTTGGAGATGTTCACGAACG
GACCGTCGTCGACCTATCCGATCGATTACATGGTTTCGTGGTATGGCAAACCCGACAACATCGCGCAGAAGGCCAACAAT
TGGTCCGGCAACAACTATGAGCGCTGGCAGAACGAGGAGTACGATAAGTTGTACGAGCAAGCGCTGGTCGAGCTCGATCC
GAAGAAACAGGAAGAGCTGTTCATCAAGATGAACGATCTGGTCGTGAACAACGTGGTAGTCATTCCGCTGGTGCACCGAA
ACAGCGTGAGCGGTCGAAAGAAGGATTTGACCGGCCTCGAACTCTCCCGCTGGACCGACGAGACCTGGAACATCGCGAAC
TGGCGACGGTCGAGCTAG

Upstream 100 bases:

>100_bases
TTGACATCGTCAGTGATGCGACATAGAATGGCGCCGTTCGCGGATGTCGGACGGCGGTCGCGCAGCCGAATCGTTCGTCG
ATATGGAGGAGGTGAGACGA

Downstream 100 bases:

>100_bases
CGCGGGTGGTGGGGACGGGGTGAGCGCGCCCCGTCCCCTTTTTCTCTAACAGGGGTGAGGAGCGCAGGATGACGCAGTAT
CTGATCCGGCGGATCTTGAT

Product: peptide/opine/nickel uptake family ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 645

Protein sequence:

>645_residues
MVSRFAGSGDGGVKREEGETMETLRELEAAARSGQLSRRDVLKRAAALGASAPVIASLLAACARQEATPTPAPAAQTPAA
ATPAPAASPTPAAAASPTPAPAAKRGQGGLVKLLWWQAPTILNPHLAQGSKDFNASRLVLEPLADINDKGELVPVLAAEI
PSVENGGVSKDAKTVTWKLKKDVKWSDGQPFTSKDVKFTYEYVIDEKTTATTIANYTVIESIETPDDHTVVIRFKDPNPA
WMNVFVGPYGRILPQHILKDYVGEKARTAPFNLNPIGTGPYKVKEFKPGDVVVYEMNENYREPDKPYFAQVEFKGGGDAT
TAARAVLQTGEVDYAWNLQVEAQVLDQLEKAGVGVVEVIEGVYVERILVNMTDPRKEVDGERSKLGVPHPWQSDLRVRQA
YALACQRDVIANTLYGRAGKATSNILVAPERFVSKNTSWKFDLDAAAKLLDEAGWTKGPDGVRQKDGVRMEVVYQTTINP
VRQKTQEIIKSAFEKLGIKVELKSIEASVFFSSDPGNPDTAAHFYADLEMFTNGPSSTYPIDYMVSWYGKPDNIAQKANN
WSGNNYERWQNEEYDKLYEQALVELDPKKQEELFIKMNDLVVNNVVVIPLVHRNSVSGRKKDLTGLELSRWTDETWNIAN
WRRSS

Sequences:

>Translated_645_residues
MVSRFAGSGDGGVKREEGETMETLRELEAAARSGQLSRRDVLKRAAALGASAPVIASLLAACARQEATPTPAPAAQTPAA
ATPAPAASPTPAAAASPTPAPAAKRGQGGLVKLLWWQAPTILNPHLAQGSKDFNASRLVLEPLADINDKGELVPVLAAEI
PSVENGGVSKDAKTVTWKLKKDVKWSDGQPFTSKDVKFTYEYVIDEKTTATTIANYTVIESIETPDDHTVVIRFKDPNPA
WMNVFVGPYGRILPQHILKDYVGEKARTAPFNLNPIGTGPYKVKEFKPGDVVVYEMNENYREPDKPYFAQVEFKGGGDAT
TAARAVLQTGEVDYAWNLQVEAQVLDQLEKAGVGVVEVIEGVYVERILVNMTDPRKEVDGERSKLGVPHPWQSDLRVRQA
YALACQRDVIANTLYGRAGKATSNILVAPERFVSKNTSWKFDLDAAAKLLDEAGWTKGPDGVRQKDGVRMEVVYQTTINP
VRQKTQEIIKSAFEKLGIKVELKSIEASVFFSSDPGNPDTAAHFYADLEMFTNGPSSTYPIDYMVSWYGKPDNIAQKANN
WSGNNYERWQNEEYDKLYEQALVELDPKKQEELFIKMNDLVVNNVVVIPLVHRNSVSGRKKDLTGLELSRWTDETWNIAN
WRRSS
>Mature_645_residues
MVSRFAGSGDGGVKREEGETMETLRELEAAARSGQLSRRDVLKRAAALGASAPVIASLLAACARQEATPTPAPAAQTPAA
ATPAPAASPTPAAAASPTPAPAAKRGQGGLVKLLWWQAPTILNPHLAQGSKDFNASRLVLEPLADINDKGELVPVLAAEI
PSVENGGVSKDAKTVTWKLKKDVKWSDGQPFTSKDVKFTYEYVIDEKTTATTIANYTVIESIETPDDHTVVIRFKDPNPA
WMNVFVGPYGRILPQHILKDYVGEKARTAPFNLNPIGTGPYKVKEFKPGDVVVYEMNENYREPDKPYFAQVEFKGGGDAT
TAARAVLQTGEVDYAWNLQVEAQVLDQLEKAGVGVVEVIEGVYVERILVNMTDPRKEVDGERSKLGVPHPWQSDLRVRQA
YALACQRDVIANTLYGRAGKATSNILVAPERFVSKNTSWKFDLDAAAKLLDEAGWTKGPDGVRQKDGVRMEVVYQTTINP
VRQKTQEIIKSAFEKLGIKVELKSIEASVFFSSDPGNPDTAAHFYADLEMFTNGPSSTYPIDYMVSWYGKPDNIAQKANN
WSGNNYERWQNEEYDKLYEQALVELDPKKQEELFIKMNDLVVNNVVVIPLVHRNSVSGRKKDLTGLELSRWTDETWNIAN
WRRSS

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=512, Percent_Identity=24.609375, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI1789397, Length=547, Percent_Identity=22.4862888482633, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787495, Length=524, Percent_Identity=23.8549618320611, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1789887, Length=401, Percent_Identity=25.9351620947631, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1789966, Length=536, Percent_Identity=22.9477611940299, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787762, Length=471, Percent_Identity=22.5053078556263, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87081878, Length=506, Percent_Identity=23.9130434782609, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 71097; Mature: 71097

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSRFAGSGDGGVKREEGETMETLRELEAAARSGQLSRRDVLKRAAALGASAPVIASLLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
ACARQEATPTPAPAAQTPAAATPAPAASPTPAAAASPTPAPAAKRGQGGLVKLLWWQAPT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
ILNPHLAQGSKDFNASRLVLEPLADINDKGELVPVLAAEIPSVENGGVSKDAKTVTWKLK
CCCCHHHCCCCCCCCCCEEEHHHHCCCCCCCEEEEEHHCCCCCCCCCCCCCCCEEEEEEE
KDVKWSDGQPFTSKDVKFTYEYVIDEKTTATTIANYTVIESIETPDDHTVVIRFKDPNPA
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECEEEEEECCCCCCCEEEEEEECCCCC
WMNVFVGPYGRILPQHILKDYVGEKARTAPFNLNPIGTGPYKVKEFKPGDVVVYEMNENY
EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
REPDKPYFAQVEFKGGGDATTAARAVLQTGEVDYAWNLQVEAQVLDQLEKAGVGVVEVIE
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHH
GVYVERILVNMTDPRKEVDGERSKLGVPHPWQSDLRVRQAYALACQRDVIANTLYGRAGK
HHHHHHHEECCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ATSNILVAPERFVSKNTSWKFDLDAAAKLLDEAGWTKGPDGVRQKDGVRMEVVYQTTINP
CCCCEEECCHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCHH
VRQKTQEIIKSAFEKLGIKVELKSIEASVFFSSDPGNPDTAAHFYADLEMFTNGPSSTYP
HHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCHHHHEEEHHHHCCCCCCCCC
IDYMVSWYGKPDNIAQKANNWSGNNYERWQNEEYDKLYEQALVELDPKKQEELFIKMNDL
EEEEEEECCCCHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCE
VVNNVVVIPLVHRNSVSGRKKDLTGLELSRWTDETWNIANWRRSS
EECCEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVSRFAGSGDGGVKREEGETMETLRELEAAARSGQLSRRDVLKRAAALGASAPVIASLLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
ACARQEATPTPAPAAQTPAAATPAPAASPTPAAAASPTPAPAAKRGQGGLVKLLWWQAPT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
ILNPHLAQGSKDFNASRLVLEPLADINDKGELVPVLAAEIPSVENGGVSKDAKTVTWKLK
CCCCHHHCCCCCCCCCCEEEHHHHCCCCCCCEEEEEHHCCCCCCCCCCCCCCCEEEEEEE
KDVKWSDGQPFTSKDVKFTYEYVIDEKTTATTIANYTVIESIETPDDHTVVIRFKDPNPA
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECEEEEEECCCCCCCEEEEEEECCCCC
WMNVFVGPYGRILPQHILKDYVGEKARTAPFNLNPIGTGPYKVKEFKPGDVVVYEMNENY
EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
REPDKPYFAQVEFKGGGDATTAARAVLQTGEVDYAWNLQVEAQVLDQLEKAGVGVVEVIE
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHH
GVYVERILVNMTDPRKEVDGERSKLGVPHPWQSDLRVRQAYALACQRDVIANTLYGRAGK
HHHHHHHEECCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ATSNILVAPERFVSKNTSWKFDLDAAAKLLDEAGWTKGPDGVRQKDGVRMEVVYQTTINP
CCCCEEECCHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCHH
VRQKTQEIIKSAFEKLGIKVELKSIEASVFFSSDPGNPDTAAHFYADLEMFTNGPSSTYP
HHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCHHHHEEEHHHHCCCCCCCCC
IDYMVSWYGKPDNIAQKANNWSGNNYERWQNEEYDKLYEQALVELDPKKQEELFIKMNDL
EEEEEEECCCCHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCE
VVNNVVVIPLVHRNSVSGRKKDLTGLELSRWTDETWNIANWRRSS
EECCEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA