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The map label for this gene is appB [H]

Identifier: 221633236

GI number: 221633236

Start: 1238223

End: 1239182

Strand: Reverse

Name: appB [H]

Synonym: trd_1254

Alternate gene names: 221633236

Gene position: 1239182-1238223 (Counterclockwise)

Preceding gene: 221633237

Following gene: 221633235

Centisome position: 61.87

GC content: 58.65

Gene sequence:

>960_bases
ATGACGCAGTATCTGATCCGGCGGATCTTGATCTCGATTCCGACCCTCGTCGCGATCAGCATCGTCATCTTCACGATTCT
GGCCCTGGCACCGGGCGACCCGCTGTCCGAGTTAGCGATGAATCCTGCGGTACCACCCGAGGTGCGCCAACGGATCCGGC
AGAGCATGGGTTTGGACGACCCGATTCCGGTTCGCTACGTCAAATGGGCGTCGTCAATGCTGCGCGGCGACTTCGGATAC
TCCTTCCGCTCCAAGTCGCCGGTGAGCGATCTCATTCGCCAGCGTCTGCCGACCACGCTCTACGTGATCGGCACGGCCTA
CCTGGTGTCGGTCCTCATCGCGATACCAGTCGGGGTGCTCTCGGCGGTCCGACAGTACTCGATCTTCGACAATATCGCGA
CGACGTTAGCATTCATTGGCTTTTCGCTTCCCACCTTCGTGACCGGTATCTTGTTCATTCTCGTCTTCAGCGTGAAACTA
GGTTGGTTACCGATGATCTACCGCACGACTATCGAGGTCGAGGGTCTGGCTGGCTTATGGATGAAGATCAAGCAGGCATT
GATGCCGATTGCGGTGCTGGGACTGTTCGAAACTGCGGCACTGACGCGGTACACCCGAGCGGCCATGCTCGAGACGATCC
ATCAGGACTACGTGCGCACGGCGCGTGCCAAGGGGTTGAGCGAACGTGTCGTGATCATGCGGCACGCGATGCGCAATGCG
CTGATTCCCGTAGTCACGATCGTTGCGTTGAGCATTCCCGGCATCTTCACCGGAGCGGTCATCACGGAGCAGATCTTCCG
CGTTCCCGGTATGGGCTCGCTCCTGATCAGCGCGATCCGCGACAACGACACACCGGTGATCATGGCGATCACGATCATCT
TCTCCGCGCTGGTCGTCTTGTTCAACCTGATCGCCGATATTTTGTACGGGGTACTCGATCCGCGGATCAAGTACGAGTGA

Upstream 100 bases:

>100_bases
GGAACATCGCGAACTGGCGACGGTCGAGCTAGCGCGGGTGGTGGGGACGGGGTGAGCGCGCCCCGTCCCCTTTTTCTCTA
ACAGGGGTGAGGAGCGCAGG

Downstream 100 bases:

>100_bases
GTGGCCGCGACGGGGGGGTAACGCGATGTCCGAAGCGACCGAGCAGCGCAGGCTGGAGACCGCGGCACGCACGGTCGGGC
CACCCGTGGTACTGCCGACA

Product: oligopeptide transport system permease OppB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTQYLIRRILISIPTLVAISIVIFTILALAPGDPLSELAMNPAVPPEVRQRIRQSMGLDDPIPVRYVKWASSMLRGDFGY
SFRSKSPVSDLIRQRLPTTLYVIGTAYLVSVLIAIPVGVLSAVRQYSIFDNIATTLAFIGFSLPTFVTGILFILVFSVKL
GWLPMIYRTTIEVEGLAGLWMKIKQALMPIAVLGLFETAALTRYTRAAMLETIHQDYVRTARAKGLSERVVIMRHAMRNA
LIPVVTIVALSIPGIFTGAVITEQIFRVPGMGSLLISAIRDNDTPVIMAITIIFSALVVLFNLIADILYGVLDPRIKYE

Sequences:

>Translated_319_residues
MTQYLIRRILISIPTLVAISIVIFTILALAPGDPLSELAMNPAVPPEVRQRIRQSMGLDDPIPVRYVKWASSMLRGDFGY
SFRSKSPVSDLIRQRLPTTLYVIGTAYLVSVLIAIPVGVLSAVRQYSIFDNIATTLAFIGFSLPTFVTGILFILVFSVKL
GWLPMIYRTTIEVEGLAGLWMKIKQALMPIAVLGLFETAALTRYTRAAMLETIHQDYVRTARAKGLSERVVIMRHAMRNA
LIPVVTIVALSIPGIFTGAVITEQIFRVPGMGSLLISAIRDNDTPVIMAITIIFSALVVLFNLIADILYGVLDPRIKYE
>Mature_318_residues
TQYLIRRILISIPTLVAISIVIFTILALAPGDPLSELAMNPAVPPEVRQRIRQSMGLDDPIPVRYVKWASSMLRGDFGYS
FRSKSPVSDLIRQRLPTTLYVIGTAYLVSVLIAIPVGVLSAVRQYSIFDNIATTLAFIGFSLPTFVTGILFILVFSVKLG
WLPMIYRTTIEVEGLAGLWMKIKQALMPIAVLGLFETAALTRYTRAAMLETIHQDYVRTARAKGLSERVVIMRHAMRNAL
IPVVTIVALSIPGIFTGAVITEQIFRVPGMGSLLISAIRDNDTPVIMAITIIFSALVVLFNLIADILYGVLDPRIKYE

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=319, Percent_Identity=36.9905956112853, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.5029585798817, Blast_Score=224, Evalue=6e-60,
Organism=Escherichia coli, GI1787497, Length=321, Percent_Identity=34.5794392523364, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI1789888, Length=319, Percent_Identity=36.6771159874608, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=34.384858044164, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1788504, Length=365, Percent_Identity=31.7808219178082, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=30.4029304029304, Blast_Score=147, Evalue=9e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35267; Mature: 35136

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TQYLIRRILISIPTLVAISIVIFTILALAPGDPLSELAMNPAVPPEVRQRIRQSMGLDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCC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HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]