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The map label for this gene is ccmH [H]

Identifier: 221633204

GI number: 221633204

Start: 1208040

End: 1208525

Strand: Reverse

Name: ccmH [H]

Synonym: trd_1221

Alternate gene names: 221633204

Gene position: 1208525-1208040 (Counterclockwise)

Preceding gene: 221633205

Following gene: 221633203

Centisome position: 60.34

GC content: 61.32

Gene sequence:

>486_bases
GTGACTCGGCTGGGTGCACGGGTGAGTCAGCTCGTTCCGGGGTTCGTCATCGTGGTTCTCGTGAGCTTCTTGTTCGCTGG
AGCGGTCCAAGCGGAAGAAGCGCTGTCACCAGAGGCGCTGGAGATCGCCAATCAGCTCAATTGTCCCGTCTGCCAGGGCC
AGAGCGTCCGCGACTCCAACTCCGAACTCGCGCGTCAGATGCGTCAACTCATCCAGCAAAAGCTCGATGCCGGCGAATCG
CGTGAGGAGATTCTCCAGTATTTCGTCGATCGCTATGGAGTGAGCGTTCTCCGCGAACCGCCCCGTCAGGGTTACTTCTG
GGTCCTCTGGTGGGGGCCGGTCGTTGGGCTGGTGGGAGGTATCCTGTTGCTCGTTTTGTACTTCCGACGGCGAGATGCAG
CAGCGAGTGGCGTCGAGGAACCAGTGGCACCTGAGGAACTGCGACGCGTCGAACAGCTCCTCGAGCCGGAAGGGAGAGTC
CGCTGA

Upstream 100 bases:

>100_bases
GTTCCCGCGCCGGCTCGCCTGCCGCGTACCGTTCCGGGTATGGCACGCGAGGCATAGCATGACTGCGCGAGGGTGGCGAG
CACGAGTTCGAAGGTGGCGA

Downstream 100 bases:

>100_bases
TGCTGCTCGATACGGTCCTCTTGCTCCTCCTGGCGATCGGGGTTGTCGCTTTCGTCCTGCACCCCTTGTGGATCGCCCGG
CGCAGAGTAGCGGGGCCCGC

Product: CcmH, cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTRLGARVSQLVPGFVIVVLVSFLFAGAVQAEEALSPEALEIANQLNCPVCQGQSVRDSNSELARQMRQLIQQKLDAGES
REEILQYFVDRYGVSVLREPPRQGYFWVLWWGPVVGLVGGILLLVLYFRRRDAAASGVEEPVAPEELRRVEQLLEPEGRV
R

Sequences:

>Translated_161_residues
MTRLGARVSQLVPGFVIVVLVSFLFAGAVQAEEALSPEALEIANQLNCPVCQGQSVRDSNSELARQMRQLIQQKLDAGES
REEILQYFVDRYGVSVLREPPRQGYFWVLWWGPVVGLVGGILLLVLYFRRRDAAASGVEEPVAPEELRRVEQLLEPEGRV
R
>Mature_160_residues
TRLGARVSQLVPGFVIVVLVSFLFAGAVQAEEALSPEALEIANQLNCPVCQGQSVRDSNSELARQMRQLIQQKLDAGESR
EEILQYFVDRYGVSVLREPPRQGYFWVLWWGPVVGLVGGILLLVLYFRRRDAAASGVEEPVAPEELRRVEQLLEPEGRVR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=90, Percent_Identity=37.7777777777778, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 18063; Mature: 17932

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLGARVSQLVPGFVIVVLVSFLFAGAVQAEEALSPEALEIANQLNCPVCQGQSVRDSN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
SELARQMRQLIQQKLDAGESREEILQYFVDRYGVSVLREPPRQGYFWVLWWGPVVGLVGG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHH
ILLLVLYFRRRDAAASGVEEPVAPEELRRVEQLLEPEGRVR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TRLGARVSQLVPGFVIVVLVSFLFAGAVQAEEALSPEALEIANQLNCPVCQGQSVRDSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
SELARQMRQLIQQKLDAGESREEILQYFVDRYGVSVLREPPRQGYFWVLWWGPVVGLVGG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHH
ILLLVLYFRRRDAAASGVEEPVAPEELRRVEQLLEPEGRVR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]