| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633201
Identifier: 221633201
GI number: 221633201
Start: 1206252
End: 1206920
Strand: Reverse
Name: 221633201
Synonym: trd_1218
Alternate gene names: NA
Gene position: 1206920-1206252 (Counterclockwise)
Preceding gene: 221633202
Following gene: 221633200
Centisome position: 60.26
GC content: 62.93
Gene sequence:
>669_bases ATGAGTGCCTGGAGCCAGTTCACCGCGATCGTCAAGCGTGACCTTCTCCTCGAGTGGCGGGCGCGCGAACTCGTCCTCGG GATGCTCGTGATGACGCTCTTGACCTTGCTGATTTTCACTTTTGCTTTCGATTTGAGCGGCGTCCAGCGTGCGGCGAGCG GTTCAGGGGCCTTGTGGGTCGCGATCGTCTTTGCAACGCTCCTCGGGTGGGGACGTGCTGTCGCCCTGGATCGCCAGGAA GGTGCCTGGGAGGGACTTCTTCTGAGCCCCGTTGAGCGACCGGTTATTTTCATCGCAAAGCTCGTGAGTATGCTGGTCTT CGTCACGATCGTCGAGCTCGTCGCGCTCCTCGTCCTGGCCGTCCTCTTCGCACTGCCGGTTTTGCAGCCTGGGGTGCTCG TAGTGGTTGGGCTGGGCACGCTCGGGCTCTGCACGCTCGGCACGCTGTTCGCTGCGATGACCGCCAATGTCCGCTCGCGT GAGGTGCTTCTTCCAGCCCTGTTGTTCCCGCTGGCTGTGCCGGTCGTCATCGGTGCGGTTCGGGCAACGACGCTCGAGTT GAATGGCTTCACGGGAGACGCGGCGCCGTGGAAGAGTCTGCTCGGGGGCTTCGCCGCATTGTTCTTCGCGCTCGGTGCAC TGACCTTCGGGAGCGTGACCGAAGAGTGA
Upstream 100 bases:
>100_bases AGCGGGCCATCTATCTCGAGCGCGGGCGGATCGTCTGGTCGGCGCGCGGGCGAGACGAGCTCGATCTTCACCTGCGGATC CAGCCGAGGCTGGTGACCGT
Downstream 100 bases:
>100_bases ACGAATCGGCTCGAAAGGAGAAAGGAGAGTGAGCATGGCGACAGTCACGAACACAGTCAGGCGACCAGCGACCACTGCAT GGTTGTCGGTTCTCGCGGCG
Product: heme exporter protein B
Products: NA
Alternate protein names: Heme Exporter Protein B; ABC-Type Transport System Permease
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWVAIVFATLLGWGRAVALDRQE GAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLAVLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSR EVLLPALLFPLAVPVVIGAVRATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE
Sequences:
>Translated_222_residues MSAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWVAIVFATLLGWGRAVALDRQE GAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLAVLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSR EVLLPALLFPLAVPVVIGAVRATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE >Mature_221_residues SAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWVAIVFATLLGWGRAVALDRQEG AWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLAVLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSRE VLLPALLFPLAVPVVIGAVRATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE
Specific function: Unknown
COG id: COG2386
COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23568; Mature: 23436
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH AIVFATLLGWGRAVALDRQEGAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLA HHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSREVLLPALLFPLAVPVVIGAV HHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH RATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE HHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH AIVFATLLGWGRAVALDRQEGAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLA HHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSREVLLPALLFPLAVPVVIGAV HHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH RATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE HHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA