Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221633201

Identifier: 221633201

GI number: 221633201

Start: 1206252

End: 1206920

Strand: Reverse

Name: 221633201

Synonym: trd_1218

Alternate gene names: NA

Gene position: 1206920-1206252 (Counterclockwise)

Preceding gene: 221633202

Following gene: 221633200

Centisome position: 60.26

GC content: 62.93

Gene sequence:

>669_bases
ATGAGTGCCTGGAGCCAGTTCACCGCGATCGTCAAGCGTGACCTTCTCCTCGAGTGGCGGGCGCGCGAACTCGTCCTCGG
GATGCTCGTGATGACGCTCTTGACCTTGCTGATTTTCACTTTTGCTTTCGATTTGAGCGGCGTCCAGCGTGCGGCGAGCG
GTTCAGGGGCCTTGTGGGTCGCGATCGTCTTTGCAACGCTCCTCGGGTGGGGACGTGCTGTCGCCCTGGATCGCCAGGAA
GGTGCCTGGGAGGGACTTCTTCTGAGCCCCGTTGAGCGACCGGTTATTTTCATCGCAAAGCTCGTGAGTATGCTGGTCTT
CGTCACGATCGTCGAGCTCGTCGCGCTCCTCGTCCTGGCCGTCCTCTTCGCACTGCCGGTTTTGCAGCCTGGGGTGCTCG
TAGTGGTTGGGCTGGGCACGCTCGGGCTCTGCACGCTCGGCACGCTGTTCGCTGCGATGACCGCCAATGTCCGCTCGCGT
GAGGTGCTTCTTCCAGCCCTGTTGTTCCCGCTGGCTGTGCCGGTCGTCATCGGTGCGGTTCGGGCAACGACGCTCGAGTT
GAATGGCTTCACGGGAGACGCGGCGCCGTGGAAGAGTCTGCTCGGGGGCTTCGCCGCATTGTTCTTCGCGCTCGGTGCAC
TGACCTTCGGGAGCGTGACCGAAGAGTGA

Upstream 100 bases:

>100_bases
AGCGGGCCATCTATCTCGAGCGCGGGCGGATCGTCTGGTCGGCGCGCGGGCGAGACGAGCTCGATCTTCACCTGCGGATC
CAGCCGAGGCTGGTGACCGT

Downstream 100 bases:

>100_bases
ACGAATCGGCTCGAAAGGAGAAAGGAGAGTGAGCATGGCGACAGTCACGAACACAGTCAGGCGACCAGCGACCACTGCAT
GGTTGTCGGTTCTCGCGGCG

Product: heme exporter protein B

Products: NA

Alternate protein names: Heme Exporter Protein B; ABC-Type Transport System Permease

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWVAIVFATLLGWGRAVALDRQE
GAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLAVLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSR
EVLLPALLFPLAVPVVIGAVRATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE

Sequences:

>Translated_222_residues
MSAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWVAIVFATLLGWGRAVALDRQE
GAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLAVLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSR
EVLLPALLFPLAVPVVIGAVRATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE
>Mature_221_residues
SAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWVAIVFATLLGWGRAVALDRQEG
AWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLAVLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSRE
VLLPALLFPLAVPVVIGAVRATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE

Specific function: Unknown

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23568; Mature: 23436

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AIVFATLLGWGRAVALDRQEGAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLA
HHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSREVLLPALLFPLAVPVVIGAV
HHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE
HHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAWSQFTAIVKRDLLLEWRARELVLGMLVMTLLTLLIFTFAFDLSGVQRAASGSGALWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AIVFATLLGWGRAVALDRQEGAWEGLLLSPVERPVIFIAKLVSMLVFVTIVELVALLVLA
HHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFALPVLQPGVLVVVGLGTLGLCTLGTLFAAMTANVRSREVLLPALLFPLAVPVVIGAV
HHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RATTLELNGFTGDAAPWKSLLGGFAALFFALGALTFGSVTEE
HHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA