| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633052
Identifier: 221633052
GI number: 221633052
Start: 1042859
End: 1043824
Strand: Reverse
Name: 221633052
Synonym: trd_1068
Alternate gene names: NA
Gene position: 1043824-1042859 (Counterclockwise)
Preceding gene: 221633053
Following gene: 221633048
Centisome position: 52.11
GC content: 62.42
Gene sequence:
>966_bases GTGGACTGGGGTCCAATCATCGATGGGCACAGCGATTTTGTCCTCTCTCTCCTCGAGACCGGTCGAGACTTTCTCGTCGA AAGTCACGAAGGGCACGTCGATCTGCCGCGTGCCCAACGCGGGCGCCTGGGTGCGATGCTGAGCGCTGTCTTCGTTCGCA ACGAGTATCTACCGGCGCAAGCGCTGGCCAGAACGATGCGCGGCGTGGATCGCCTACGGGCGACCGTCGCTCGCTCTCGC GGTGCGATGGAAATCGTGACCGACGTCGACCAACTCGAGCGGTGCTTGGATCGGGGCGTTTTCGGCGCGATTCTGCACTT CGAGGGTGCAGAGGCGATCGATGCCGAGTTCGCGGTTCTCCGACTGAGCTACGACCTTGGCTTGCGTTCGCTCGGGCTCA CCTGGAGTCGTCCGAACATATTCGCCGAGGGTGTCGGTCCGGAGAATCGCGGAGGTGGGCTCACCAAGCTGGGGCGCGAG TTGGTCTGTGCGTGTAACGAGATGGGGATCCTGATCGATGTCTCGCATCTCAACGATGCTGGCTTCTGGGACGTGCTGGA AGAATCGACGCGACCGGTGGTCGCAAGTCACAGCAATTGTCGCGCGCTTTGTGCTGTGGAACGCAATCTGACCGATGACC AAATCCGAGCCCTCGCTGAGAAAGACGGCCTCGTGGGGATCAACTTCCACGTGGGCTTCATCCGCGAAGGAGCCGAGCGA CCCAGCGATGTGACGCTGGACGATGTGATCGCGCATATCGACCACATCGTTCAGCTCGTCGGGGTCGATCACGTCGGGTT CGGCTCGGATTTCGATGGTGCCACGATGCCCGCTGAACTCGCGGATGCCGCCCAGCTGCCTCGACTGGTCGAGGCGCTGG CACGACACGGCTACGACGAGCAGGCGCTCCGCAAAATCTCTCGCGACAACTGGCTGCGCGTGTTCCGCGCCGTGTGGCGA TCGTAG
Upstream 100 bases:
>100_bases GCTGGGCTGCATGTCACAGCGTCCAAGCCGAAGATGCTGGAGGGTGCTCGGGCTGGTGAAGCACAGGTGGTCGGCCGAGC GATGCCGTGAGGAGGTTCTC
Downstream 100 bases:
>100_bases CGCCATCAGTCGCCGCTTATCAGACGTCCGTCACGAGTTCGAGCGACTTTTCCGCGACCAAGCGCTGAACCATCGTGATG AAGCGCTCGATCGACATCGA
Product: renal dipeptidase family protein
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MDWGPIIDGHSDFVLSLLETGRDFLVESHEGHVDLPRAQRGRLGAMLSAVFVRNEYLPAQALARTMRGVDRLRATVARSR GAMEIVTDVDQLERCLDRGVFGAILHFEGAEAIDAEFAVLRLSYDLGLRSLGLTWSRPNIFAEGVGPENRGGGLTKLGRE LVCACNEMGILIDVSHLNDAGFWDVLEESTRPVVASHSNCRALCAVERNLTDDQIRALAEKDGLVGINFHVGFIREGAER PSDVTLDDVIAHIDHIVQLVGVDHVGFGSDFDGATMPAELADAAQLPRLVEALARHGYDEQALRKISRDNWLRVFRAVWR S
Sequences:
>Translated_321_residues MDWGPIIDGHSDFVLSLLETGRDFLVESHEGHVDLPRAQRGRLGAMLSAVFVRNEYLPAQALARTMRGVDRLRATVARSR GAMEIVTDVDQLERCLDRGVFGAILHFEGAEAIDAEFAVLRLSYDLGLRSLGLTWSRPNIFAEGVGPENRGGGLTKLGRE LVCACNEMGILIDVSHLNDAGFWDVLEESTRPVVASHSNCRALCAVERNLTDDQIRALAEKDGLVGINFHVGFIREGAER PSDVTLDDVIAHIDHIVQLVGVDHVGFGSDFDGATMPAELADAAQLPRLVEALARHGYDEQALRKISRDNWLRVFRAVWR S >Mature_321_residues MDWGPIIDGHSDFVLSLLETGRDFLVESHEGHVDLPRAQRGRLGAMLSAVFVRNEYLPAQALARTMRGVDRLRATVARSR GAMEIVTDVDQLERCLDRGVFGAILHFEGAEAIDAEFAVLRLSYDLGLRSLGLTWSRPNIFAEGVGPENRGGGLTKLGRE LVCACNEMGILIDVSHLNDAGFWDVLEESTRPVVASHSNCRALCAVERNLTDDQIRALAEKDGLVGINFHVGFIREGAER PSDVTLDDVIAHIDHIVQLVGVDHVGFGSDFDGATMPAELADAAQLPRLVEALARHGYDEQALRKISRDNWLRVFRAVWR S
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=328, Percent_Identity=30.4878048780488, Blast_Score=156, Evalue=3e-38, Organism=Homo sapiens, GI4758190, Length=328, Percent_Identity=30.4878048780488, Blast_Score=156, Evalue=3e-38, Organism=Homo sapiens, GI11641269, Length=325, Percent_Identity=32.3076923076923, Blast_Score=152, Evalue=3e-37, Organism=Homo sapiens, GI193211608, Length=326, Percent_Identity=29.4478527607362, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI193211610, Length=326, Percent_Identity=29.7546012269939, Blast_Score=126, Evalue=3e-29, Organism=Drosophila melanogaster, GI221475880, Length=340, Percent_Identity=30.2941176470588, Blast_Score=157, Evalue=1e-38, Organism=Drosophila melanogaster, GI281362638, Length=336, Percent_Identity=29.7619047619048, Blast_Score=154, Evalue=8e-38, Organism=Drosophila melanogaster, GI281362636, Length=336, Percent_Identity=29.7619047619048, Blast_Score=154, Evalue=8e-38, Organism=Drosophila melanogaster, GI161083233, Length=334, Percent_Identity=29.3413173652695, Blast_Score=134, Evalue=9e-32, Organism=Drosophila melanogaster, GI21356391, Length=304, Percent_Identity=26.6447368421053, Blast_Score=85, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 35357; Mature: 35357
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWGPIIDGHSDFVLSLLETGRDFLVESHEGHVDLPRAQRGRLGAMLSAVFVRNEYLPAQ CCCCCCCCCCHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH ALARTMRGVDRLRATVARSRGAMEIVTDVDQLERCLDRGVFGAILHFEGAEAIDAEFAVL HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEHEEECCCCHHCHHHEEE RLSYDLGLRSLGLTWSRPNIFAEGVGPENRGGGLTKLGRELVCACNEMGILIDVSHLNDA EEEHHHCHHHCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC GFWDVLEESTRPVVASHSNCRALCAVERNLTDDQIRALAEKDGLVGINFHVGFIREGAER CHHHHHHHCCCCEEECCCCCCEEEEHHCCCCHHHHHHHHHCCCEEEEEEEEHHHHHCCCC PSDVTLDDVIAHIDHIVQLVGVDHVGFGSDFDGATMPAELADAAQLPRLVEALARHGYDE CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH QALRKISRDNWLRVFRAVWRS HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDWGPIIDGHSDFVLSLLETGRDFLVESHEGHVDLPRAQRGRLGAMLSAVFVRNEYLPAQ CCCCCCCCCCHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH ALARTMRGVDRLRATVARSRGAMEIVTDVDQLERCLDRGVFGAILHFEGAEAIDAEFAVL HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEHEEECCCCHHCHHHEEE RLSYDLGLRSLGLTWSRPNIFAEGVGPENRGGGLTKLGRELVCACNEMGILIDVSHLNDA EEEHHHCHHHCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC GFWDVLEESTRPVVASHSNCRALCAVERNLTDDQIRALAEKDGLVGINFHVGFIREGAER CHHHHHHHCCCCEEECCCCCCEEEEHHCCCCHHHHHHHHHCCCEEEEEEEEHHHHHCCCC PSDVTLDDVIAHIDHIVQLVGVDHVGFGSDFDGATMPAELADAAQLPRLVEALARHGYDE CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH QALRKISRDNWLRVFRAVWRS HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]