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The map label for this gene is 221632940

Identifier: 221632940

GI number: 221632940

Start: 922336

End: 923037

Strand: Reverse

Name: 221632940

Synonym: trd_0946

Alternate gene names: NA

Gene position: 923037-922336 (Counterclockwise)

Preceding gene: 221632941

Following gene: 221632939

Centisome position: 46.08

GC content: 61.97

Gene sequence:

>702_bases
ATGAGTACGACAGGATGGATGGACACGGAACGACATCGATTGCTCGCTCGGCTGCGCGAGCATCTCGAGACCATCGCTCA
GCAGGATCGTGGACTGGAAAGTGTGTCGCGACGGGAATGGCTGGCTCAGCAGCTCGCCGAACAGTACCGGCCATTGCGGC
GATTCGTGCGGCGAGAAATTGGCCGCTTCGTCGCTTTCGGGGTCATTCCGTCGGGTGTCCTCGATGAACAGGATGTGACC
GATGCAGTGCTCCTCCGAGCGATCCAGCATTGGCGTGAGGCGCCTGAGCGCGGACTCTACCGATGGCTTCGGCGGACAGC
TCGCCGGGTGGTGCGCCAACTCGTCGAGCAGGAGCGACGCCGGCTCGAGCACGAGCGATCACTCGAAGAGCCGGTCGGAT
ATCAGGGGGATGAATGGCCCGACCAAGTTGTCCGCCTCATCGATGTTTTAGCTGATCCGACCGCTGACATTCCCGAAGAC
GTTGTCCTCGCGGAGGAAACGCAACAGATTCTGGACGAGGCACTGGAGCGTCTACCCGAAAGCTGGCGCGAGATCTTCCT
CTTGAAGGTCGATGGCTGGTCGGACGAACAAATCGCGCTCGCCGAAGGGGTACCAGTCGAGCGGGTTCCGCGGATCATCG
AGGCCAGTCGCCAGTTCCTGGCCGATCTTCTCCGCGAGCGCCGGCAGGACCTGGAAGCGTAG

Upstream 100 bases:

>100_bases
GCCGCGCCCGTATCCACCCGGGCTTGGCACGGCCGCCGATCGCACCGGTCGAAGAGGAAAGTGCCAGTGAAGGGGAAGAA
TCGACGCCGGAGCGTGAGCG

Downstream 100 bases:

>100_bases
GTTTGCTGTGCGATCGGGGGAAAGATGAGTCCGACGCGCCTCGAAGTCGCCCTTTCGACCGATCTCTATGAATTGACCAT
GGCGTCGAGCTATCACACGC

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSTTGWMDTERHRLLARLREHLETIAQQDRGLESVSRREWLAQQLAEQYRPLRRFVRREIGRFVAFGVIPSGVLDEQDVT
DAVLLRAIQHWREAPERGLYRWLRRTARRVVRQLVEQERRRLEHERSLEEPVGYQGDEWPDQVVRLIDVLADPTADIPED
VVLAEETQQILDEALERLPESWREIFLLKVDGWSDEQIALAEGVPVERVPRIIEASRQFLADLLRERRQDLEA

Sequences:

>Translated_233_residues
MSTTGWMDTERHRLLARLREHLETIAQQDRGLESVSRREWLAQQLAEQYRPLRRFVRREIGRFVAFGVIPSGVLDEQDVT
DAVLLRAIQHWREAPERGLYRWLRRTARRVVRQLVEQERRRLEHERSLEEPVGYQGDEWPDQVVRLIDVLADPTADIPED
VVLAEETQQILDEALERLPESWREIFLLKVDGWSDEQIALAEGVPVERVPRIIEASRQFLADLLRERRQDLEA
>Mature_232_residues
STTGWMDTERHRLLARLREHLETIAQQDRGLESVSRREWLAQQLAEQYRPLRRFVRREIGRFVAFGVIPSGVLDEQDVTD
AVLLRAIQHWREAPERGLYRWLRRTARRVVRQLVEQERRRLEHERSLEEPVGYQGDEWPDQVVRLIDVLADPTADIPEDV
VLAEETQQILDEALERLPESWREIFLLKVDGWSDEQIALAEGVPVERVPRIIEASRQFLADLLRERRQDLEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27554; Mature: 27422

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTGWMDTERHRLLARLREHLETIAQQDRGLESVSRREWLAQQLAEQYRPLRRFVRREI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRFVAFGVIPSGVLDEQDVTDAVLLRAIQHWREAPERGLYRWLRRTARRVVRQLVEQERR
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLEHERSLEEPVGYQGDEWPDQVVRLIDVLADPTADIPEDVVLAEETQQILDEALERLPE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SWREIFLLKVDGWSDEQIALAEGVPVERVPRIIEASRQFLADLLRERRQDLEA
HHHHEEHHEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STTGWMDTERHRLLARLREHLETIAQQDRGLESVSRREWLAQQLAEQYRPLRRFVRREI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRFVAFGVIPSGVLDEQDVTDAVLLRAIQHWREAPERGLYRWLRRTARRVVRQLVEQERR
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLEHERSLEEPVGYQGDEWPDQVVRLIDVLADPTADIPEDVVLAEETQQILDEALERLPE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SWREIFLLKVDGWSDEQIALAEGVPVERVPRIIEASRQFLADLLRERRQDLEA
HHHHEEHHEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA