| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632871
Identifier: 221632871
GI number: 221632871
Start: 848921
End: 850093
Strand: Reverse
Name: 221632871
Synonym: trd_0869
Alternate gene names: NA
Gene position: 850093-848921 (Counterclockwise)
Preceding gene: 221632872
Following gene: 221632870
Centisome position: 42.44
GC content: 59.76
Gene sequence:
>1173_bases ATGAACCAGCGTTCAGCACAGGCTCTGGGGCTTGTGGTGGGACTCTCGGTCGGGCGATGGATCGGACAGCAGACGCGTGA CCGCTTGATGGTTCTCGAACCTCCTCGGCTCGTCGACTGGGAGCGGGCGCGGGAGATCGCGTTACGTCTCTCCGGTGGAG TGCGCTTGAGTCCATTGGAGCGAGAGGAGGCAACGGATCGCTATCGCAGACTCGTCACGGAACTCGCGCCGGCCATCGCT GACTTTGTTGGTTCACCGGTTCCCAGCGGCATACATCGCGTCTATGCCTTCGATCGGATCGATTGGATCGATGCGAATCT GGAAGGATTTGCAGAGGTTCTGCGTCCGCTGGAGGTCGTCATCCAACTACCGGAACAACCGCTCGCTCGGGCTGCTGCGG TCCTCTGGGCGCACGCTGGCCGGTCCGCTGCGACGATGGAAGTGGGGATGGCACTTGGGTTCCTCTCGCGGCGAGTTTTG GGCCAGTACGACATTGCTGTACTCGGTGGGGAACCGACTGCGGCTGGAAAACTCTATTTCGTCGAGCCGAACATTCGCTG GTTGATCAGGAACTGGCGACTGCCCGAGCACGACTTTTATCGTTGGCTGGTCTTGCACGAGGTAACCCATGCCTTCGAGT TCGAAAGCAGTCCTTGGTTGCGCGATCATGTCAATGGGCTCTTGCGCCAGTGGGTCGAAGCGCTGCGACATGAGGGGAAG CTCTTTCATCGCGTCATCGAGATTCTGCGGACCGCTCGGCGAGGGGACTGGACCGCCGATACGACGTGGATGGAACTGCT CATGTCTACCGAGCAGCGACGTCTGTTCCGGCAGTTGCAGGCGATCATGGCTGTCATCGAAGGGTACAGCAACTATGTCA TGCGCGAAGTCGGTCGAGAAATCGTTGAATCCTACCCACTGATCGAGCGTCGTTTCGAGGAGCGTGAGCGTGCTCGCACA CCAGCGGAGCGTTTGCTACTGCGCCTGACCGGGTTGGACATGAAACTCGAGCAGTATCGGCGTGGTGAGGGGTTCTGCCG AGCGATCGCTGATCGCATGGGACGCGAGGCCTTCGCTGTTTTGTGGAGAGGCCCAGAGTGGTTGCCGACGTACGAGGAAC TCGCTGAACCGGATAGCTGGATCAGTCGCGTGACGAGTGGTTCGTCAGAATGA
Upstream 100 bases:
>100_bases ACGGAGACTCCGGAAGAGGGAACTCCGCAACCCACAGAGGCCACGACCCCGGTACCGGAGGCGACGCCGACGCCGGTGCC GTAGTGCGAGGAGTGCGATC
Downstream 100 bases:
>100_bases CGCTCGATATCCTCAAGGTCGCTGGTGAGCTTCGGGCAGCAGTAGAGACGGTAATCGAAAAGGAGCGCAGTGGACGCCCT GCGCTTCTCGAACTCTTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MNQRSAQALGLVVGLSVGRWIGQQTRDRLMVLEPPRLVDWERAREIALRLSGGVRLSPLEREEATDRYRRLVTELAPAIA DFVGSPVPSGIHRVYAFDRIDWIDANLEGFAEVLRPLEVVIQLPEQPLARAAAVLWAHAGRSAATMEVGMALGFLSRRVL GQYDIAVLGGEPTAAGKLYFVEPNIRWLIRNWRLPEHDFYRWLVLHEVTHAFEFESSPWLRDHVNGLLRQWVEALRHEGK LFHRVIEILRTARRGDWTADTTWMELLMSTEQRRLFRQLQAIMAVIEGYSNYVMREVGREIVESYPLIERRFEERERART PAERLLLRLTGLDMKLEQYRRGEGFCRAIADRMGREAFAVLWRGPEWLPTYEELAEPDSWISRVTSGSSE
Sequences:
>Translated_390_residues MNQRSAQALGLVVGLSVGRWIGQQTRDRLMVLEPPRLVDWERAREIALRLSGGVRLSPLEREEATDRYRRLVTELAPAIA DFVGSPVPSGIHRVYAFDRIDWIDANLEGFAEVLRPLEVVIQLPEQPLARAAAVLWAHAGRSAATMEVGMALGFLSRRVL GQYDIAVLGGEPTAAGKLYFVEPNIRWLIRNWRLPEHDFYRWLVLHEVTHAFEFESSPWLRDHVNGLLRQWVEALRHEGK LFHRVIEILRTARRGDWTADTTWMELLMSTEQRRLFRQLQAIMAVIEGYSNYVMREVGREIVESYPLIERRFEERERART PAERLLLRLTGLDMKLEQYRRGEGFCRAIADRMGREAFAVLWRGPEWLPTYEELAEPDSWISRVTSGSSE >Mature_390_residues MNQRSAQALGLVVGLSVGRWIGQQTRDRLMVLEPPRLVDWERAREIALRLSGGVRLSPLEREEATDRYRRLVTELAPAIA DFVGSPVPSGIHRVYAFDRIDWIDANLEGFAEVLRPLEVVIQLPEQPLARAAAVLWAHAGRSAATMEVGMALGFLSRRVL GQYDIAVLGGEPTAAGKLYFVEPNIRWLIRNWRLPEHDFYRWLVLHEVTHAFEFESSPWLRDHVNGLLRQWVEALRHEGK LFHRVIEILRTARRGDWTADTTWMELLMSTEQRRLFRQLQAIMAVIEGYSNYVMREVGREIVESYPLIERRFEERERART PAERLLLRLTGLDMKLEQYRRGEGFCRAIADRMGREAFAVLWRGPEWLPTYEELAEPDSWISRVTSGSSE
Specific function: Unknown
COG id: COG5282
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45151; Mature: 45151
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQRSAQALGLVVGLSVGRWIGQQTRDRLMVLEPPRLVDWERAREIALRLSGGVRLSPLE CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCEECCCC REEATDRYRRLVTELAPAIADFVGSPVPSGIHRVYAFDRIDWIDANLEGFAEVLRPLEVV HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHH IQLPEQPLARAAAVLWAHAGRSAATMEVGMALGFLSRRVLGQYDIAVLGGEPTAAGKLYF HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE VEPNIRWLIRNWRLPEHDFYRWLVLHEVTHAFEFESSPWLRDHVNGLLRQWVEALRHEGK ECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LFHRVIEILRTARRGDWTADTTWMELLMSTEQRRLFRQLQAIMAVIEGYSNYVMREVGRE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVESYPLIERRFEERERARTPAERLLLRLTGLDMKLEQYRRGEGFCRAIADRMGREAFAV HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCHHHHHH LWRGPEWLPTYEELAEPDSWISRVTSGSSE HCCCCCCCCCHHHHCCHHHHHHHHHCCCCC >Mature Secondary Structure MNQRSAQALGLVVGLSVGRWIGQQTRDRLMVLEPPRLVDWERAREIALRLSGGVRLSPLE CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCEECCCC REEATDRYRRLVTELAPAIADFVGSPVPSGIHRVYAFDRIDWIDANLEGFAEVLRPLEVV HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHH IQLPEQPLARAAAVLWAHAGRSAATMEVGMALGFLSRRVLGQYDIAVLGGEPTAAGKLYF HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE VEPNIRWLIRNWRLPEHDFYRWLVLHEVTHAFEFESSPWLRDHVNGLLRQWVEALRHEGK ECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LFHRVIEILRTARRGDWTADTTWMELLMSTEQRRLFRQLQAIMAVIEGYSNYVMREVGRE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVESYPLIERRFEERERARTPAERLLLRLTGLDMKLEQYRRGEGFCRAIADRMGREAFAV HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCHHHHHH LWRGPEWLPTYEELAEPDSWISRVTSGSSE HCCCCCCCCCHHHHCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA