| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632870
Identifier: 221632870
GI number: 221632870
Start: 847731
End: 848924
Strand: Reverse
Name: 221632870
Synonym: trd_0868
Alternate gene names: NA
Gene position: 848924-847731 (Counterclockwise)
Preceding gene: 221632871
Following gene: 221632869
Centisome position: 42.38
GC content: 60.97
Gene sequence:
>1194_bases ATGACGCTCGATATCCTCAAGGTCGCTGGTGAGCTTCGGGCAGCAGTAGAGACGGTAATCGAAAAGGAGCGCAGTGGACG CCCTGCGCTTCTCGAACTCTTGCGTGTGTTCGACGACGCGGAGATCACGCGCCGCGTGGCAAGCGCGCGCACCTCATGGC TTCTGGGTCTGCCGCTCGGACGTTATTTCGAACGAATCGCCGCTCCCGCACGAGTGCGTGCGGGCTACAGCTGCGTGGCC ACTGATGCATCGGTGGTGGTAAGCGATCGCCACGGTCCAGTGCAGTACGTGGTCATCAATGTCGGCTTCTGCGTCCTGGA ATACGGTGAGGAGCCAGCGGCTCAACTCGGTTCTGACCCGATCGTCTTGTGGAGAGAGGAAGAACTCTCGATCCCCGATG GTACTCGCCGAATACCGATCACCGGTAACGTGCTCGCGATGCGTCGGATGGTTGCTGAACTCGAAGCAGCGTTACGCCTG ACCCAGCATGTTCACGAGCCGGTTCTTGCTCTCCAGGATGGAACGCTGATTCCTTGGGTGTTGGAGGGGCAGACCTCCAG CCTGGTGCAGTGGGGAATCGAGGGATATGCGCGGGCCCTGGGGGAGTTTCGCCGTCGGAGAACACCAGTGGCTGGGGTCA TCAGTTATCCTGGTTCGCGTGACATCATCAACGTCCTGCGTGTCGCAGCTTGCGATTATCCCCGACTCGGGCAAAGGGTG AATTGCGATGATTGCCTCCGGCGTGTGGCACGAGGGGAACGCGTGCAGGCCTGTGCGATCGTCCCCGACGTCACCGACCG CTGGTTCTTCGCGACACTCGATGACGTTCGCCTGGCGCCTGGGGAGCGGTCTGCATGCTTTCGGAGCCAATCGTCCATTC TGGATCAGCTGCCTGCGGACGACCGCATCGTGTTCTTTTATCTTCATACTGGAACGGAAGTCGCTCGTGTCGAACTGCCG CATTGGGTCGCTGTGGATCGGGATCTCCTCGATTTTGTGCATGCGGTCGTGTGGGATCAGTGCAGTCGGGCACGAGGGTA CCCGCTGGCACTCCAAGAGGCGCACGAGCAGGCCGTCGTGCATCGAGAAGAGCGGCTGCAGCTCGCCGGCTTGATCGAGC AGTTCTTCGCCCGCAATGGTTTCCTGGAGCAACGCTCGGCGAAGGAGCGGAGCAAGCGGGTGCGGTATGCATGA
Upstream 100 bases:
>100_bases CCTTCGCTGTTTTGTGGAGAGGCCCAGAGTGGTTGCCGACGTACGAGGAACTCGCTGAACCGGATAGCTGGATCAGTCGC GTGACGAGTGGTTCGTCAGA
Downstream 100 bases:
>100_bases GCGACGAATCGGCGAAGTCGTCGAGACTTCGACCGTGCAGTTCGTAGTCGAGTGCGATGAGTTGGATCGGCTTCCCGAAT TGGGCTCGTTCGTGCGTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MTLDILKVAGELRAAVETVIEKERSGRPALLELLRVFDDAEITRRVASARTSWLLGLPLGRYFERIAAPARVRAGYSCVA TDASVVVSDRHGPVQYVVINVGFCVLEYGEEPAAQLGSDPIVLWREEELSIPDGTRRIPITGNVLAMRRMVAELEAALRL TQHVHEPVLALQDGTLIPWVLEGQTSSLVQWGIEGYARALGEFRRRRTPVAGVISYPGSRDIINVLRVAACDYPRLGQRV NCDDCLRRVARGERVQACAIVPDVTDRWFFATLDDVRLAPGERSACFRSQSSILDQLPADDRIVFFYLHTGTEVARVELP HWVAVDRDLLDFVHAVVWDQCSRARGYPLALQEAHEQAVVHREERLQLAGLIEQFFARNGFLEQRSAKERSKRVRYA
Sequences:
>Translated_397_residues MTLDILKVAGELRAAVETVIEKERSGRPALLELLRVFDDAEITRRVASARTSWLLGLPLGRYFERIAAPARVRAGYSCVA TDASVVVSDRHGPVQYVVINVGFCVLEYGEEPAAQLGSDPIVLWREEELSIPDGTRRIPITGNVLAMRRMVAELEAALRL TQHVHEPVLALQDGTLIPWVLEGQTSSLVQWGIEGYARALGEFRRRRTPVAGVISYPGSRDIINVLRVAACDYPRLGQRV NCDDCLRRVARGERVQACAIVPDVTDRWFFATLDDVRLAPGERSACFRSQSSILDQLPADDRIVFFYLHTGTEVARVELP HWVAVDRDLLDFVHAVVWDQCSRARGYPLALQEAHEQAVVHREERLQLAGLIEQFFARNGFLEQRSAKERSKRVRYA >Mature_396_residues TLDILKVAGELRAAVETVIEKERSGRPALLELLRVFDDAEITRRVASARTSWLLGLPLGRYFERIAAPARVRAGYSCVAT DASVVVSDRHGPVQYVVINVGFCVLEYGEEPAAQLGSDPIVLWREEELSIPDGTRRIPITGNVLAMRRMVAELEAALRLT QHVHEPVLALQDGTLIPWVLEGQTSSLVQWGIEGYARALGEFRRRRTPVAGVISYPGSRDIINVLRVAACDYPRLGQRVN CDDCLRRVARGERVQACAIVPDVTDRWFFATLDDVRLAPGERSACFRSQSSILDQLPADDRIVFFYLHTGTEVARVELPH WVAVDRDLLDFVHAVVWDQCSRARGYPLALQEAHEQAVVHREERLQLAGLIEQFFARNGFLEQRSAKERSKRVRYA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44632; Mature: 44500
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDILKVAGELRAAVETVIEKERSGRPALLELLRVFDDAEITRRVASARTSWLLGLPLG CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCHH RYFERIAAPARVRAGYSCVATDASVVVSDRHGPVQYVVINVGFCVLEYGEEPAAQLGSDP HHHHHHCCCHHHHCCCEEEECCCEEEEECCCCCEEEEEEEECEEEEECCCCHHHHCCCCC IVLWREEELSIPDGTRRIPITGNVLAMRRMVAELEAALRLTQHVHEPVLALQDGTLIPWV EEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEE LEGQTSSLVQWGIEGYARALGEFRRRRTPVAGVISYPGSRDIINVLRVAACDYPRLGQRV ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCHHCCCCC NCDDCLRRVARGERVQACAIVPDVTDRWFFATLDDVRLAPGERSACFRSQSSILDQLPAD CHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHCCCC DRIVFFYLHTGTEVARVELPHWVAVDRDLLDFVHAVVWDQCSRARGYPLALQEAHEQAVV CCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH HREERLQLAGLIEQFFARNGFLEQRSAKERSKRVRYA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure TLDILKVAGELRAAVETVIEKERSGRPALLELLRVFDDAEITRRVASARTSWLLGLPLG CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCHH RYFERIAAPARVRAGYSCVATDASVVVSDRHGPVQYVVINVGFCVLEYGEEPAAQLGSDP HHHHHHCCCHHHHCCCEEEECCCEEEEECCCCCEEEEEEEECEEEEECCCCHHHHCCCCC IVLWREEELSIPDGTRRIPITGNVLAMRRMVAELEAALRLTQHVHEPVLALQDGTLIPWV EEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEE LEGQTSSLVQWGIEGYARALGEFRRRRTPVAGVISYPGSRDIINVLRVAACDYPRLGQRV ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCHHCCCCC NCDDCLRRVARGERVQACAIVPDVTDRWFFATLDDVRLAPGERSACFRSQSSILDQLPAD CHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHCCCC DRIVFFYLHTGTEVARVELPHWVAVDRDLLDFVHAVVWDQCSRARGYPLALQEAHEQAVV CCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH HREERLQLAGLIEQFFARNGFLEQRSAKERSKRVRYA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA