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The map label for this gene is ocd2 [H]

Identifier: 221632801

GI number: 221632801

Start: 777431

End: 778420

Strand: Reverse

Name: ocd2 [H]

Synonym: trd_0794

Alternate gene names: 221632801

Gene position: 778420-777431 (Counterclockwise)

Preceding gene: 221632805

Following gene: 221632798

Centisome position: 38.86

GC content: 61.31

Gene sequence:

>990_bases
ATGCTGGTCTTGACGCGACGCGACGTGCAAGAACTCGTGCCGATGTCGAGAGCGATAGAACTCGTCAAGCAGGCCTTCCG
CGATCTCTCCCTCGGTCGAGCACAGTCACCGCTGCGGACACCGCTCGAGGTTGTGGACCACAACGGTACCGTCCTCTTCA
TGCCAGCTTTCGTCCCCTCGACCGGTGGACTCGGCCTGAAGGTCGTCTCGGTGTTTACTGACAACCCGCGCCTGCATAGC
AAGCCGACCATTCACGCGGCAGTCCTCACCGTCGACCCGATCACGGGCGAACCGAGCGCGTTGCTCGACGGCACCTATCT
CACTGCTCTCCGTACCGGAGCCGCCTCCGGTGCCGCTACCGACCTACTGGCCCGCCACGACGCCGAAACGCTTCTCATCA
TCGGCGCCGGAGCACAGGGTCCGACGCAGGCATGGGCGGTCCTGACTGTTCGACCGATTCGAAAAGTCTATGTGTACGAT
CGCAACCGTGAAGCCGCCGCAACCTTCGGTGACCGTCTTCGCCAGCTCATGCCTGATTGTTCAGCCGAGGTCATTCCGAT
CGAAGATCCGCTCACGGTCTTGCCCCGTGTCGACGTTATCTGTACCGCCACCACAGCTCGAGAACCGCTCTTTCCTGACA
AACTCGTACCAGCAGGCGTCCATATCAATGCCATTGGCGCCTTTACTCCCGAGATGCAGGAGATCCCACCGGAAACAGTA
GCTCGGGCTTACGTCGTGGTCGACGCGCTGAGCGCAGCGCTCGCCGAGGCAGGTGACCTGATCAAGCCACTTCGCGCTGG
TCTCATCGACGAAGAGCATATTCGAACCGAACTCGGTCAGATCGTCGCCGGGGAGAGGCCAGGTCGGACATCGCCCGAGC
AAATCACCCTTTTCAAATCAGTGGGTAACGCCGTTCAGGATCTGGCAGTCGCCGCCGAAGCCGTGAGCCAGGCTGTTGCG
AGAGGGCGTGGGCTCACGATCTCGTTGTGA

Upstream 100 bases:

>100_bases
CGAGTTGATTTTCACTTTTCGGTCCCGCACACATCGCGAAAACGCTCTCGTGGTACACTGCGGCCGACTGAGTGCAACTG
TTCCGGAGGGATGATTGACG

Downstream 100 bases:

>100_bases
AAACCGCGACAAACAAGCATGCCGTCATCGGTGGCAATCTGGGACTCAGCGAAGGATGGATCAGCGTCCGACGCTGAGCG
GTTCTCCTGCCGCGATCGGG

Product: putative ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLVLTRRDVQELVPMSRAIELVKQAFRDLSLGRAQSPLRTPLEVVDHNGTVLFMPAFVPSTGGLGLKVVSVFTDNPRLHS
KPTIHAAVLTVDPITGEPSALLDGTYLTALRTGAASGAATDLLARHDAETLLIIGAGAQGPTQAWAVLTVRPIRKVYVYD
RNREAAATFGDRLRQLMPDCSAEVIPIEDPLTVLPRVDVICTATTAREPLFPDKLVPAGVHINAIGAFTPEMQEIPPETV
ARAYVVVDALSAALAEAGDLIKPLRAGLIDEEHIRTELGQIVAGERPGRTSPEQITLFKSVGNAVQDLAVAAEAVSQAVA
RGRGLTISL

Sequences:

>Translated_329_residues
MLVLTRRDVQELVPMSRAIELVKQAFRDLSLGRAQSPLRTPLEVVDHNGTVLFMPAFVPSTGGLGLKVVSVFTDNPRLHS
KPTIHAAVLTVDPITGEPSALLDGTYLTALRTGAASGAATDLLARHDAETLLIIGAGAQGPTQAWAVLTVRPIRKVYVYD
RNREAAATFGDRLRQLMPDCSAEVIPIEDPLTVLPRVDVICTATTAREPLFPDKLVPAGVHINAIGAFTPEMQEIPPETV
ARAYVVVDALSAALAEAGDLIKPLRAGLIDEEHIRTELGQIVAGERPGRTSPEQITLFKSVGNAVQDLAVAAEAVSQAVA
RGRGLTISL
>Mature_329_residues
MLVLTRRDVQELVPMSRAIELVKQAFRDLSLGRAQSPLRTPLEVVDHNGTVLFMPAFVPSTGGLGLKVVSVFTDNPRLHS
KPTIHAAVLTVDPITGEPSALLDGTYLTALRTGAASGAATDLLARHDAETLLIIGAGAQGPTQAWAVLTVRPIRKVYVYD
RNREAAATFGDRLRQLMPDCSAEVIPIEDPLTVLPRVDVICTATTAREPLFPDKLVPAGVHINAIGAFTPEMQEIPPETV
ARAYVVVDALSAALAEAGDLIKPLRAGLIDEEHIRTELGQIVAGERPGRTSPEQITLFKSVGNAVQDLAVAAEAVSQAVA
RGRGLTISL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=292, Percent_Identity=32.5342465753425, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI62241008, Length=287, Percent_Identity=32.7526132404181, Blast_Score=141, Evalue=8e-34,
Organism=Drosophila melanogaster, GI24642678, Length=331, Percent_Identity=32.3262839879154, Blast_Score=119, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35026; Mature: 35026

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRRDVQELVPMSRAIELVKQAFRDLSLGRAQSPLRTPLEVVDHNGTVLFMPAFVPS
CEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEEECCC
TGGLGLKVVSVFTDNPRLHSKPTIHAAVLTVDPITGEPSALLDGTYLTALRTGAASGAAT
CCCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCHHCCCHHHHHHHHCCCCCHHH
DLLARHDAETLLIIGAGAQGPTQAWAVLTVRPIRKVYVYDRNREAAATFGDRLRQLMPDC
HHHHHCCCCEEEEEECCCCCCCCEEEEEEEEECEEEEEEECCCCHHHHHHHHHHHHCCCC
SAEVIPIEDPLTVLPRVDVICTATTAREPLFPDKLVPAGVHINAIGAFTPEMQEIPPETV
CCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCHHHH
ARAYVVVDALSAALAEAGDLIKPLRAGLIDEEHIRTELGQIVAGERPGRTSPEQITLFKS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
VGNAVQDLAVAAEAVSQAVARGRGLTISL
HHHHHHHHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MLVLTRRDVQELVPMSRAIELVKQAFRDLSLGRAQSPLRTPLEVVDHNGTVLFMPAFVPS
CEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEEECCC
TGGLGLKVVSVFTDNPRLHSKPTIHAAVLTVDPITGEPSALLDGTYLTALRTGAASGAAT
CCCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCHHCCCHHHHHHHHCCCCCHHH
DLLARHDAETLLIIGAGAQGPTQAWAVLTVRPIRKVYVYDRNREAAATFGDRLRQLMPDC
HHHHHCCCCEEEEEECCCCCCCCEEEEEEEEECEEEEEEECCCCHHHHHHHHHHHHCCCC
SAEVIPIEDPLTVLPRVDVICTATTAREPLFPDKLVPAGVHINAIGAFTPEMQEIPPETV
CCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCHHHH
ARAYVVVDALSAALAEAGDLIKPLRAGLIDEEHIRTELGQIVAGERPGRTSPEQITLFKS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
VGNAVQDLAVAAEAVSQAVARGRGLTISL
HHHHHHHHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]