Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221632791

Identifier: 221632791

GI number: 221632791

Start: 771186

End: 771440

Strand: Reverse

Name: 221632791

Synonym: trd_0784

Alternate gene names: NA

Gene position: 771440-771186 (Counterclockwise)

Preceding gene: 221632793

Following gene: 221632782

Centisome position: 38.51

GC content: 60.0

Gene sequence:

>255_bases
ATGCACCAAGTCATCGCGCATGTCCTGAACGACGACCCGTTCGTCGCCGAAGTCGATAAACCCCCTGATCCGCAACACCA
GTCCGTGTTCCTACGGAAGCCGCGGCGATTCGACGGCGAACGCTTGACCACCACCGCTCAGAGAGTGATCACTGTGCTGT
ACCCGTGGCATCGCATCACATACATCGAACTCCTGGACGAGGGGAGCGACCAGCGTCCAAGTCAGCTCGTCACTGTCGTC
CGCGACGAGCACTGA

Upstream 100 bases:

>100_bases
TCCCGACACCACTCGAGGGCCGAGGCGTCTCCTATCTTGGAACCTCGGACAGTCGGATCTCAGTTATACGGCTCGCACTG
GATTCGAGGAGGAACGAAGC

Downstream 100 bases:

>100_bases
GATTCACTCACGAACGCGGCTCGTCTCCCGAAACCTCGGCAGTCGCTTCGCGCGTCGCGGTTCGGAACTCTCGGATCGTG
CGTCCGATGGCACTACCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MHQVIAHVLNDDPFVAEVDKPPDPQHQSVFLRKPRRFDGERLTTTAQRVITVLYPWHRITYIELLDEGSDQRPSQLVTVV
RDEH

Sequences:

>Translated_84_residues
MHQVIAHVLNDDPFVAEVDKPPDPQHQSVFLRKPRRFDGERLTTTAQRVITVLYPWHRITYIELLDEGSDQRPSQLVTVV
RDEH
>Mature_84_residues
MHQVIAHVLNDDPFVAEVDKPPDPQHQSVFLRKPRRFDGERLTTTAQRVITVLYPWHRITYIELLDEGSDQRPSQLVTVV
RDEH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9855; Mature: 9855

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQVIAHVLNDDPFVAEVDKPPDPQHQSVFLRKPRRFDGERLTTTAQRVITVLYPWHRIT
CHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHEE
YIELLDEGSDQRPSQLVTVVRDEH
EEEEECCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MHQVIAHVLNDDPFVAEVDKPPDPQHQSVFLRKPRRFDGERLTTTAQRVITVLYPWHRIT
CHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHEE
YIELLDEGSDQRPSQLVTVVRDEH
EEEEECCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA