Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221632559

Identifier: 221632559

GI number: 221632559

Start: 531388

End: 531729

Strand: Reverse

Name: 221632559

Synonym: trd_0534

Alternate gene names: NA

Gene position: 531729-531388 (Counterclockwise)

Preceding gene: 221632560

Following gene: 221632558

Centisome position: 26.55

GC content: 60.23

Gene sequence:

>342_bases
GTGGCTGAGCGTCGACTCTATATTTGGCTCGAGCGTGATCCACTGGCCGGACCACCGGATACTGCCATCGAGGACGTGCC
AGGACGGGCCGACCTCGATCTCCTGGCGGAAGCCATCCGACAAGGGAAACTCGGTCGATACCTTCCGACCAAGCTCGCTC
TTTCCCGCCACCGTGTCCCCTTGCTGCCGTCCGGTTACCGCCGAGTCAATGTCGCGAACCTGCTCCGACAATACCGTATT
CCCTATCGAACTCGATTAGAAGTGCTGACGGATGCCTCATCCCTCCAAGACTGTTCGTCCCGAATCGCGCGTTCGTCGCG
GGAGCACGAGCCATGTACGTGA

Upstream 100 bases:

>100_bases
AGGGCGACGATCTGCCTCTTCCCAAAGCTGAGTCCTGGATTCCCTTCACCTCCTGATCCTCGCCTCCCTTCTCGTGATAT
CGGGGCAGATGGAGCGTCTT

Downstream 100 bases:

>100_bases
CCCCGAAGGAGCTCGACCGGTTGACCGTGTTCACTTTGGCTGAACTCGCCCGTCGCCACCGCGCACGCGGGATCAAGCTC
AATTATACGGAGGCTGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MAERRLYIWLERDPLAGPPDTAIEDVPGRADLDLLAEAIRQGKLGRYLPTKLALSRHRVPLLPSGYRRVNVANLLRQYRI
PYRTRLEVLTDASSLQDCSSRIARSSREHEPCT

Sequences:

>Translated_113_residues
MAERRLYIWLERDPLAGPPDTAIEDVPGRADLDLLAEAIRQGKLGRYLPTKLALSRHRVPLLPSGYRRVNVANLLRQYRI
PYRTRLEVLTDASSLQDCSSRIARSSREHEPCT
>Mature_112_residues
AERRLYIWLERDPLAGPPDTAIEDVPGRADLDLLAEAIRQGKLGRYLPTKLALSRHRVPLLPSGYRRVNVANLLRQYRIP
YRTRLEVLTDASSLQDCSSRIARSSREHEPCT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12923; Mature: 12792

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERRLYIWLERDPLAGPPDTAIEDVPGRADLDLLAEAIRQGKLGRYLPTKLALSRHRVP
CCCCEEEEEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
LLPSGYRRVNVANLLRQYRIPYRTRLEVLTDASSLQDCSSRIARSSREHEPCT
CCCCCCCEECHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AERRLYIWLERDPLAGPPDTAIEDVPGRADLDLLAEAIRQGKLGRYLPTKLALSRHRVP
CCCEEEEEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
LLPSGYRRVNVANLLRQYRIPYRTRLEVLTDASSLQDCSSRIARSSREHEPCT
CCCCCCCEECHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA