| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is actII-2 [H]
Identifier: 221632518
GI number: 221632518
Start: 487703
End: 489337
Strand: Reverse
Name: actII-2 [H]
Synonym: trd_0492
Alternate gene names: 221632518
Gene position: 489337-487703 (Counterclockwise)
Preceding gene: 221632519
Following gene: 221632511
Centisome position: 24.43
GC content: 64.16
Gene sequence:
>1635_bases ATGACAGCGGCACCACGCACCCGATGGCTTGGGCTCGCGTCGCTCGCCCTCGGTCTAGCTATGATCATCGTCGATGCGAC GATCGTCAATGTCGCGATTCCCAGTATCATCGAGGATCTCGGTCTCCAGTTAACTGATGCGGAGTGGGTGAATACGGTCT ACTCGCTCGTCTTCGCTGCTCTACTGGTCACGGTCGGACGTCTCGGTGACTTGTACGGACGCAAGCGGATCTACCTCGGC GGGCTAGCCCTCTTCGTCGGCGCCAGTCTCCTCTGTGCCAGTGCTCCATCCGGGACACTGCTCATCGCGGCACGTGCTCT CCAGGGCATCGGCGCAGCCTGCATCCTGCCCTCGACCCTTTCCAGCGTCAACGCCATGTTCCGGGGACGCGAGCGAGCCC TCGCCTTCGGCATCTGGGGATCCGTGATCGGTGGCATGGCAGCGCTCGGGCCGCTGGTCGGTGGTTGGCTGACCACCGAC TTCTCGTGGCGCTGGGCCTTTTACATCAATTTGCCGATCGGCTTGGTCGCTGGAACCATCGCCCTCCTCACCGTCCCGGA AACGCGTGATCCTTCAGCGGCTCCTGGCATCGATCTGATCGGCATCGTGACCAGCGCCATCGGATTCGCTGCGCTCGTCT TCGGCTTGATCGAGGGAGAGCGCTATGGTTGGTGGCGACCGACGGACACGTTCCGCATCGGTTCGTGGGAATGGCCATTC GCCACGCTGTCACCTGTGCCGGTGGCCCTGGCCCTCGCTGCGCTGTTCCTTCCAACGTTCGCCCTCTACGAACTCCGGCG TGTCCGAGCCAACCGTCCGGTCCTGCTGGATCTCCGCCTCTTTCGTTACCGCACGTTTCGATGGGGCAATCTCGCGGCCC TGATCGTGAGTCTCGGCGAGTTCGGCATCGTCTTCGTTCTCCCGCTCTATCTCCAGGCGGTTCTGGGCTATACGGCCTTT CAAACCGGCCTGGTCCTGCTGGCTACCGCCATCGGCGCTTTCCTCGGTGGACCAGCGGCGGCTAACCTGGCTCAGCGTTT CGGAGCGCGTCAGGTCATCCGCGCCGGTATGCTCTTCGAGGCGGTCGGCCTCCTTTTGATCGTTCCTTTCCTCGCCCCCG ATACCACCGGTTGGCGGCTCGCTCCGGCCTTGTTTCTTTACGGCCTCGGGGTCGGGCTCGCAACGGCGCAGCTCACCTCC GTCATCCTCGCTGAAGTGCCCACAGCTCAGTCTGGCCAAGCTTCCGGAACCCAGAGCACGACACGCCAGGTGGGTGCCGC GCTGGGTATCGCACTGCTCGGCACCATCCTGGCTGCCGGCCTCGGCAGCGGAACGAAGTCGCGCCTGATCGATCAACTCG GCATCCCCCCGCAGCAGGCCGCCGCACTGGCACGTGCGGCCAAGCAATCCGCCGGCCAGATTCTCGTCCAGTTACAGACC CAACCCGGTACGCAGCCGATTGTCCAAGCCATCGAGGCTGCCTTCACCGACGCTGCCCGGCGCACCGCATTGGTCGCTGC CGCCTTCATCCTCGTCGGCTTTATCGCCAGTTGGCTGATTCCTGATATCCGGCCAGAACGCGGGCCGACTGCCGTGAGCG AGCCGGCCACCGCTGAATCCCGTCCAACAGGATGA
Upstream 100 bases:
>100_bases CAGGGAGGTATTCGGGCAAGAACCCAAACGGTGTGGTACAATTCGAGCAGGTCGAACAGAGTGAGTGTTTGGTAGTTTTG GGCAAGATTGGAGCGCTTCG
Downstream 100 bases:
>100_bases AACTCTCAGCGAGCGAACGAAACGACGAGCAAGAGCACGAGGCCCAGTGCGATGCGGTACACGATGAAGATGCTCGTACT GTAGCGCTGCAGGAAGCGCA
Product: putative transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 544; Mature: 543
Protein sequence:
>544_residues MTAAPRTRWLGLASLALGLAMIIVDATIVNVAIPSIIEDLGLQLTDAEWVNTVYSLVFAALLVTVGRLGDLYGRKRIYLG GLALFVGASLLCASAPSGTLLIAARALQGIGAACILPSTLSSVNAMFRGRERALAFGIWGSVIGGMAALGPLVGGWLTTD FSWRWAFYINLPIGLVAGTIALLTVPETRDPSAAPGIDLIGIVTSAIGFAALVFGLIEGERYGWWRPTDTFRIGSWEWPF ATLSPVPVALALAALFLPTFALYELRRVRANRPVLLDLRLFRYRTFRWGNLAALIVSLGEFGIVFVLPLYLQAVLGYTAF QTGLVLLATAIGAFLGGPAAANLAQRFGARQVIRAGMLFEAVGLLLIVPFLAPDTTGWRLAPALFLYGLGVGLATAQLTS VILAEVPTAQSGQASGTQSTTRQVGAALGIALLGTILAAGLGSGTKSRLIDQLGIPPQQAAALARAAKQSAGQILVQLQT QPGTQPIVQAIEAAFTDAARRTALVAAAFILVGFIASWLIPDIRPERGPTAVSEPATAESRPTG
Sequences:
>Translated_544_residues MTAAPRTRWLGLASLALGLAMIIVDATIVNVAIPSIIEDLGLQLTDAEWVNTVYSLVFAALLVTVGRLGDLYGRKRIYLG GLALFVGASLLCASAPSGTLLIAARALQGIGAACILPSTLSSVNAMFRGRERALAFGIWGSVIGGMAALGPLVGGWLTTD FSWRWAFYINLPIGLVAGTIALLTVPETRDPSAAPGIDLIGIVTSAIGFAALVFGLIEGERYGWWRPTDTFRIGSWEWPF ATLSPVPVALALAALFLPTFALYELRRVRANRPVLLDLRLFRYRTFRWGNLAALIVSLGEFGIVFVLPLYLQAVLGYTAF QTGLVLLATAIGAFLGGPAAANLAQRFGARQVIRAGMLFEAVGLLLIVPFLAPDTTGWRLAPALFLYGLGVGLATAQLTS VILAEVPTAQSGQASGTQSTTRQVGAALGIALLGTILAAGLGSGTKSRLIDQLGIPPQQAAALARAAKQSAGQILVQLQT QPGTQPIVQAIEAAFTDAARRTALVAAAFILVGFIASWLIPDIRPERGPTAVSEPATAESRPTG >Mature_543_residues TAAPRTRWLGLASLALGLAMIIVDATIVNVAIPSIIEDLGLQLTDAEWVNTVYSLVFAALLVTVGRLGDLYGRKRIYLGG LALFVGASLLCASAPSGTLLIAARALQGIGAACILPSTLSSVNAMFRGRERALAFGIWGSVIGGMAALGPLVGGWLTTDF SWRWAFYINLPIGLVAGTIALLTVPETRDPSAAPGIDLIGIVTSAIGFAALVFGLIEGERYGWWRPTDTFRIGSWEWPFA TLSPVPVALALAALFLPTFALYELRRVRANRPVLLDLRLFRYRTFRWGNLAALIVSLGEFGIVFVLPLYLQAVLGYTAFQ TGLVLLATAIGAFLGGPAAANLAQRFGARQVIRAGMLFEAVGLLLIVPFLAPDTTGWRLAPALFLYGLGVGLATAQLTSV ILAEVPTAQSGQASGTQSTTRQVGAALGIALLGTILAAGLGSGTKSRLIDQLGIPPQQAAALARAAKQSAGQILVQLQTQ PGTQPIVQAIEAAFTDAARRTALVAAAFILVGFIASWLIPDIRPERGPTAVSEPATAESRPTG
Specific function: Promotes the efflux of actinorhodin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=447, Percent_Identity=26.6219239373602, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1789042, Length=481, Percent_Identity=25.987525987526, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1790195, Length=494, Percent_Identity=26.5182186234818, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1788392, Length=442, Percent_Identity=28.5067873303167, Blast_Score=125, Evalue=9e-30, Organism=Escherichia coli, GI1788710, Length=498, Percent_Identity=24.4979919678715, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1790146, Length=168, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6322958, Length=560, Percent_Identity=23.3928571428571, Blast_Score=89, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6323520, Length=340, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324954, Length=400, Percent_Identity=23.5, Blast_Score=70, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6321663, Length=145, Percent_Identity=30.3448275862069, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323735, Length=495, Percent_Identity=25.2525252525253, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6325455, Length=232, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 57020; Mature: 56888
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAPRTRWLGLASLALGLAMIIVDATIVNVAIPSIIEDLGLQLTDAEWVNTVYSLVFAA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHH LLVTVGRLGDLYGRKRIYLGGLALFVGASLLCASAPSGTLLIAARALQGIGAACILPSTL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCHHHHHHHH SSVNAMFRGRERALAFGIWGSVIGGMAALGPLVGGWLTTDFSWRWAFYINLPIGLVAGTI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEEEECCHHHHHHHH ALLTVPETRDPSAAPGIDLIGIVTSAIGFAALVFGLIEGERYGWWRPTDTFRIGSWEWPF HEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC ATLSPVPVALALAALFLPTFALYELRRVRANRPVLLDLRLFRYRTFRWGNLAALIVSLGE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHH FGIVFVLPLYLQAVLGYTAFQTGLVLLATAIGAFLGGPAAANLAQRFGARQVIRAGMLFE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHH AVGLLLIVPFLAPDTTGWRLAPALFLYGLGVGLATAQLTSVILAEVPTAQSGQASGTQST HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH TRQVGAALGIALLGTILAAGLGSGTKSRLIDQLGIPPQQAAALARAAKQSAGQILVQLQT HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEC QPGTQPIVQAIEAAFTDAARRTALVAAAFILVGFIASWLIPDIRPERGPTAVSEPATAES CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC RPTG CCCC >Mature Secondary Structure TAAPRTRWLGLASLALGLAMIIVDATIVNVAIPSIIEDLGLQLTDAEWVNTVYSLVFAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHH LLVTVGRLGDLYGRKRIYLGGLALFVGASLLCASAPSGTLLIAARALQGIGAACILPSTL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCHHHHHHHH SSVNAMFRGRERALAFGIWGSVIGGMAALGPLVGGWLTTDFSWRWAFYINLPIGLVAGTI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEEEECCHHHHHHHH ALLTVPETRDPSAAPGIDLIGIVTSAIGFAALVFGLIEGERYGWWRPTDTFRIGSWEWPF HEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC ATLSPVPVALALAALFLPTFALYELRRVRANRPVLLDLRLFRYRTFRWGNLAALIVSLGE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHH FGIVFVLPLYLQAVLGYTAFQTGLVLLATAIGAFLGGPAAANLAQRFGARQVIRAGMLFE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHH AVGLLLIVPFLAPDTTGWRLAPALFLYGLGVGLATAQLTSVILAEVPTAQSGQASGTQST HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH TRQVGAALGIALLGTILAAGLGSGTKSRLIDQLGIPPQQAAALARAAKQSAGQILVQLQT HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEC QPGTQPIVQAIEAAFTDAARRTALVAAAFILVGFIASWLIPDIRPERGPTAVSEPATAES CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC RPTG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1878971; 12000953 [H]