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The map label for this gene is 221632489

Identifier: 221632489

GI number: 221632489

Start: 458554

End: 460119

Strand: Reverse

Name: 221632489

Synonym: trd_0463

Alternate gene names: NA

Gene position: 460119-458554 (Counterclockwise)

Preceding gene: 221632490

Following gene: 221632485

Centisome position: 22.97

GC content: 59.9

Gene sequence:

>1566_bases
ATGACAGGACCTCAGTACGATGCGATCGTCATCGGATCCGGGCACAACGGACTCATCGCTGCCGGCTACCTGGCCAAGGC
TGGTAAGCAGGTGCTCGTTCTCGAACGACGTCCCATCATCGGTGGAGCGACCGTCACCGAGGAACACTTCCCTGGTTATC
GACTGTCCACTTGCTCCTATGTGTGCAGCCTGCTCCTTCCCGAAGTGGTTCGCGACCTCGAGATGCCCAAGTACGGTTAC
GAAGTCCGTCCCTTCGACCCGCAATATTTCGTACCGTTTCCGGATGGGCGTTACCTCATGGTCTATCTGGACGAACGTCG
GACACACGCAGAATTAGCTAAGTTTTCTCGACGCGATGCAGAACGATGGCACGACTACTGGGCCATGTGGAACCGCATGA
TCGCTCGCTTCCGGCCATTCATTCTGCGCCCGGCACCGACGCTCGGCGAACTCGAACAAGCATTCGCTGGGCCAGACGGA
CTCGAGGATCTGCGCACGCTGCTCCTCAAGAGTATCGCTGAAGTGTTGGACACTTTTTTCGAGAGCGAGGAGATCAAGGC
TCCGCTTTGTACTGGCGGAGTGATCGGTGTGAACCTCGGCCCCAAGTCGCCCGGGACTGCCTATGTCAAGTTCCATCATC
TCTTGGGGAATCTCAACGGTCACCAAGGTGCCTGGGGCTTCGTCCGCGGCGGCATGGGCAGCATCGCCGAAGCGCTTGCC
GGTTTCTGCCGCGATCACGGCGTGACGATCCTCACGGATGCTGAAGTCGCTGAGATCGACGTCAGCGACGGAGCGGCCCG
TGGTGTCCGGCTGACCGACGGTCGACGCTTCTCAGCGCGTGTCATTCTCTCCAATGCCGACCCCCAGCGAACCTTTCTCC
AGATGGTCCCCGCGAACGCTCTGCCGGCTTCCTTCCGCGACGCGATCACACGCATGAAAGTCAAAGGCTCGGTGGTCAAG
GTACTCCTCGGATTGAACCAGCTGCCGAACTTCCGCTGTTTGCCCGGAACCGAGATCGGCCCCCAGCACACCGGTGGGAT
CGTCATCAATCCCTCGATCGACTATCTCGAACGGGCTTGGGAAGACTGTAAGCACGGCAGGCCATCGGCTCGACCGTTCA
TGGATTGCTACATCCAGTCAGCGACCGAGGACGGTCTTGCCCCACCCGGCAAGCACGTCATGTCCCTGTACGTCCAGTAC
GCACCGTATGACCTCGCTGAAGGCACTTGGGAGGAACGAAAAGACGAGATCGGTCGCAACATCATCGATACGCTCGCGGA
ATATGCACCTAACATGTGGGATGCGATCGAGCACATGAGCGTCCTCGGCCCGCGCGATATCGAAGATGTCATCGGCATCA
CCGGCGGAAACATCTTTCACGGCGAGATCACTCCTGACCAGATGTTCGTCTTCCGCCCGGCTCCCGGCTTCTCCGGTTAC
GAGTCTCCGATCGAGCGACTCTACCTCTGTGGGTCGGGGGCCTGGCCAGGTGGAGCTGTTTTCGGGGCGCCGGGACGCAA
CTGTGCACTGCAAGTCTTGGCCGATCTGGAGCGTCGCGGGGGTTGA

Upstream 100 bases:

>100_bases
CATCACTCGATGGGCGATGATCCACGGCTTGCGTCTCTCCGCACGATGCATCACGATAGTACCCGGCGGGATGGATAGTG
TGAGGACGCGAGGAGGCACC

Downstream 100 bases:

>100_bases
GCACCTCGAATAAACTCGGCCGATCTCGGGCGGCGTGGGGGGATCAGCCCCCCACGCCGCCTGTCATGCCGCGTCCGCGA
CGGCGGGCACGATTTCGCTG

Product: flavin containing amine oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MTGPQYDAIVIGSGHNGLIAAGYLAKAGKQVLVLERRPIIGGATVTEEHFPGYRLSTCSYVCSLLLPEVVRDLEMPKYGY
EVRPFDPQYFVPFPDGRYLMVYLDERRTHAELAKFSRRDAERWHDYWAMWNRMIARFRPFILRPAPTLGELEQAFAGPDG
LEDLRTLLLKSIAEVLDTFFESEEIKAPLCTGGVIGVNLGPKSPGTAYVKFHHLLGNLNGHQGAWGFVRGGMGSIAEALA
GFCRDHGVTILTDAEVAEIDVSDGAARGVRLTDGRRFSARVILSNADPQRTFLQMVPANALPASFRDAITRMKVKGSVVK
VLLGLNQLPNFRCLPGTEIGPQHTGGIVINPSIDYLERAWEDCKHGRPSARPFMDCYIQSATEDGLAPPGKHVMSLYVQY
APYDLAEGTWEERKDEIGRNIIDTLAEYAPNMWDAIEHMSVLGPRDIEDVIGITGGNIFHGEITPDQMFVFRPAPGFSGY
ESPIERLYLCGSGAWPGGAVFGAPGRNCALQVLADLERRGG

Sequences:

>Translated_521_residues
MTGPQYDAIVIGSGHNGLIAAGYLAKAGKQVLVLERRPIIGGATVTEEHFPGYRLSTCSYVCSLLLPEVVRDLEMPKYGY
EVRPFDPQYFVPFPDGRYLMVYLDERRTHAELAKFSRRDAERWHDYWAMWNRMIARFRPFILRPAPTLGELEQAFAGPDG
LEDLRTLLLKSIAEVLDTFFESEEIKAPLCTGGVIGVNLGPKSPGTAYVKFHHLLGNLNGHQGAWGFVRGGMGSIAEALA
GFCRDHGVTILTDAEVAEIDVSDGAARGVRLTDGRRFSARVILSNADPQRTFLQMVPANALPASFRDAITRMKVKGSVVK
VLLGLNQLPNFRCLPGTEIGPQHTGGIVINPSIDYLERAWEDCKHGRPSARPFMDCYIQSATEDGLAPPGKHVMSLYVQY
APYDLAEGTWEERKDEIGRNIIDTLAEYAPNMWDAIEHMSVLGPRDIEDVIGITGGNIFHGEITPDQMFVFRPAPGFSGY
ESPIERLYLCGSGAWPGGAVFGAPGRNCALQVLADLERRGG
>Mature_520_residues
TGPQYDAIVIGSGHNGLIAAGYLAKAGKQVLVLERRPIIGGATVTEEHFPGYRLSTCSYVCSLLLPEVVRDLEMPKYGYE
VRPFDPQYFVPFPDGRYLMVYLDERRTHAELAKFSRRDAERWHDYWAMWNRMIARFRPFILRPAPTLGELEQAFAGPDGL
EDLRTLLLKSIAEVLDTFFESEEIKAPLCTGGVIGVNLGPKSPGTAYVKFHHLLGNLNGHQGAWGFVRGGMGSIAEALAG
FCRDHGVTILTDAEVAEIDVSDGAARGVRLTDGRRFSARVILSNADPQRTFLQMVPANALPASFRDAITRMKVKGSVVKV
LLGLNQLPNFRCLPGTEIGPQHTGGIVINPSIDYLERAWEDCKHGRPSARPFMDCYIQSATEDGLAPPGKHVMSLYVQYA
PYDLAEGTWEERKDEIGRNIIDTLAEYAPNMWDAIEHMSVLGPRDIEDVIGITGGNIFHGEITPDQMFVFRPAPGFSGYE
SPIERLYLCGSGAWPGGAVFGAPGRNCALQVLADLERRGG

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=551, Percent_Identity=39.5644283121597, Blast_Score=385, Evalue=1e-107,
Organism=Caenorhabditis elegans, GI17540238, Length=528, Percent_Identity=39.7727272727273, Blast_Score=387, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57386; Mature: 57255

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPQYDAIVIGSGHNGLIAAGYLAKAGKQVLVLERRPIIGGATVTEEHFPGYRLSTCSY
CCCCCCCEEEEECCCCCCEEEHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
VCSLLLPEVVRDLEMPKYGYEVRPFDPQYFVPFPDGRYLMVYLDERRTHAELAKFSRRDA
HHHHHHHHHHHHCCCCCCCCEECCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHH
ERWHDYWAMWNRMIARFRPFILRPAPTLGELEQAFAGPDGLEDLRTLLLKSIAEVLDTFF
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ESEEIKAPLCTGGVIGVNLGPKSPGTAYVKFHHLLGNLNGHQGAWGFVRGGMGSIAEALA
CCCCCCCCEECCCEEEEECCCCCCCCCEEEEEHHHCCCCCCCCCCHHHHCCHHHHHHHHH
GFCRDHGVTILTDAEVAEIDVSDGAARGVRLTDGRRFSARVILSNADPQRTFLQMVPANA
HHHHHCCEEEEECCCEEEEECCCCCCCCEEECCCCCEEEEEEEECCCHHHHHHHHCCCCC
LPASFRDAITRMKVKGSVVKVLLGLNQLPNFRCLPGTEIGPQHTGGIVINPSIDYLERAW
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEECCCHHHHHHHH
EDCKHGRPSARPFMDCYIQSATEDGLAPPGKHVMSLYVQYAPYDLAEGTWEERKDEIGRN
HHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
IIDTLAEYAPNMWDAIEHMSVLGPRDIEDVIGITGGNIFHGEITPDQMFVFRPAPGFSGY
HHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCH
ESPIERLYLCGSGAWPGGAVFGAPGRNCALQVLADLERRGG
HHHHHHEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TGPQYDAIVIGSGHNGLIAAGYLAKAGKQVLVLERRPIIGGATVTEEHFPGYRLSTCSY
CCCCCCEEEEECCCCCCEEEHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
VCSLLLPEVVRDLEMPKYGYEVRPFDPQYFVPFPDGRYLMVYLDERRTHAELAKFSRRDA
HHHHHHHHHHHHCCCCCCCCEECCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHH
ERWHDYWAMWNRMIARFRPFILRPAPTLGELEQAFAGPDGLEDLRTLLLKSIAEVLDTFF
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ESEEIKAPLCTGGVIGVNLGPKSPGTAYVKFHHLLGNLNGHQGAWGFVRGGMGSIAEALA
CCCCCCCCEECCCEEEEECCCCCCCCCEEEEEHHHCCCCCCCCCCHHHHCCHHHHHHHHH
GFCRDHGVTILTDAEVAEIDVSDGAARGVRLTDGRRFSARVILSNADPQRTFLQMVPANA
HHHHHCCEEEEECCCEEEEECCCCCCCCEEECCCCCEEEEEEEECCCHHHHHHHHCCCCC
LPASFRDAITRMKVKGSVVKVLLGLNQLPNFRCLPGTEIGPQHTGGIVINPSIDYLERAW
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEECCCHHHHHHHH
EDCKHGRPSARPFMDCYIQSATEDGLAPPGKHVMSLYVQYAPYDLAEGTWEERKDEIGRN
HHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
IIDTLAEYAPNMWDAIEHMSVLGPRDIEDVIGITGGNIFHGEITPDQMFVFRPAPGFSGY
HHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCH
ESPIERLYLCGSGAWPGGAVFGAPGRNCALQVLADLERRGG
HHHHHHEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]