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The map label for this gene is ytcJ [H]

Identifier: 221632416

GI number: 221632416

Start: 388866

End: 390470

Strand: Reverse

Name: ytcJ [H]

Synonym: trd_0388

Alternate gene names: 221632416

Gene position: 390470-388866 (Counterclockwise)

Preceding gene: 221632418

Following gene: 221632415

Centisome position: 19.49

GC content: 65.05

Gene sequence:

>1605_bases
ATGCATGCCGATATCGTTCTGGTGAACGGCACCGTGCTGACTGCTTCGTCGCACACGCCTGTCGCGGAAGCGATCGCACT
GCGTGGCGAGTGGATCCTCGCTGTCGGCGCGGAACGAGTCGTCCACCATTTCGTTGGACCAGCGACCGAGGTCATCGATC
TGCAGGGCCGGACCGTGACGCCCGGGTTCAACGACGCCCATTGCCACCCGATCGCGCTCGGAATGAGCCTGCGCGAAGTC
GATGCCCGCACGCCACCCAACCGGTCGATCGAGGAGATCGTGCAACGCATCGCTCAGCGTGCAGCCAGTCAAGAGCCCGG
AACCTGGATCGTCGCACGTGGTTACGATCAGGCACACCTCGCGGAGGGACGGCACCCGACCCGCGACGACCTCGACCGGG
CGACCCAGCGTCATCCTGTTCTGCTCATCCGCGCCTGCGGCCACATCGGCGTCGCCAACAGCCTCGCCCTCGCCATCGCT
GGGATCGGCCCAGAGACTCCTGACCCTCCGGGTGGGACGATCGACCGCGGACCAGACGGTCAGCCGACCGGAGTGGTCCG
CGAAGCGGCGCTCCAGCTCGTTCGCGCCCGTCTCCCGCAGCCGAGTGTCGAAGATCTGGCCGAGGCCATCCGATTGGCCG
GCGAAACCTTCCTCAGCTTCGGCGTGACCAGCGTCCAAGAAGCAGGCATCCGCCGCGCCGAGGAGTTCCTCGCCTATCAA
TCGCTCGCCCAGCGCGGTACCCTTCCCGTCCGGACATCGCTGATGATCCTCATCAACGATCTCCTCGAGCCTTGCCGGGA
ACTCGGTCTCCGCACGGGGTTCGGAGACGCCTGGTTGCGCATCGGGCCAGCCAAGCTCTTCCTCGACGGGAGTATCGGTG
GCCGCACCGCACGGATGTCCCAACCGTACTTGGATCGCGACACGCTCGGGCTCTGGATGGACGAGCCAGACACGATGAAG
CGAAAGATCGTCGAGGCCCACTGTGCCGGTTTTCAGTGCTGTGCTCATGCCATCGGGGACGCTGCTATCGAGCTCCTGCT
CGATGCCTTCGAAGAGGCGCTGCGCCGGCAGCCACGCCCTGATCACCGTCACCGGATCGAGCACTGCAGCATCCTGCGTC
CGGATCTCGTCGATCGCATCGCTCGGCTCGGCGCTGTCCCGATTCCCGGAACGACCTTCCTATACGACTTCCAGGAGGTC
TACCTGAGCGGCCTCGGGCACGAGCGGCTTCGGTACGCCTATGCGCTGCGCACGTTCCTCGATCGCGGTATCGTCGCGGC
AGCCAGCAGCGATACGCCTGTCTGTTCGCCCAATGCCATGCTGGGCATCCAAACGATGGTCACGCGCCGGAATGCTGCTG
GGAACGTCCTCTGGCCCGAGGAAAGCATCACGCTGGAAGAGGCCATCCGCGTCTACACGCTGAACGGTGCCTATGCATCG
TTCGAGGAACGGATCAAGGGGACGCTCGAGCCCGGAAAGCTCGCCGACGTTGTGGTGCTCGAGACCGATCTTCGTTCGGT
ACAGCCGGAGGAACTCGGTCGCGTCCGCGTCGATTACACCATCGTCGGGGGACGGATCGTCTATGCTCGTCCTGGCGCAG
CGTGA

Upstream 100 bases:

>100_bases
CTGTCCCAGCTCGATACCAGCTCCGGAGCACACTGGCCAGCCATAGCTTGGATTCGTTTCCTGTGCTCGTCTGCATCTGA
CGGGAGGATGGAGAAAGCCG

Downstream 100 bases:

>100_bases
CGGACAGAAAGGGAGCATGCACCCATGGTGTGTGACCTGATCCTCCACAATGCCAACATCCTGACGCTCGACCCGGCGCA
GCCACGCGCTCGGGCAGTCG

Product: amidohydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MHADIVLVNGTVLTASSHTPVAEAIALRGEWILAVGAERVVHHFVGPATEVIDLQGRTVTPGFNDAHCHPIALGMSLREV
DARTPPNRSIEEIVQRIAQRAASQEPGTWIVARGYDQAHLAEGRHPTRDDLDRATQRHPVLLIRACGHIGVANSLALAIA
GIGPETPDPPGGTIDRGPDGQPTGVVREAALQLVRARLPQPSVEDLAEAIRLAGETFLSFGVTSVQEAGIRRAEEFLAYQ
SLAQRGTLPVRTSLMILINDLLEPCRELGLRTGFGDAWLRIGPAKLFLDGSIGGRTARMSQPYLDRDTLGLWMDEPDTMK
RKIVEAHCAGFQCCAHAIGDAAIELLLDAFEEALRRQPRPDHRHRIEHCSILRPDLVDRIARLGAVPIPGTTFLYDFQEV
YLSGLGHERLRYAYALRTFLDRGIVAAASSDTPVCSPNAMLGIQTMVTRRNAAGNVLWPEESITLEEAIRVYTLNGAYAS
FEERIKGTLEPGKLADVVVLETDLRSVQPEELGRVRVDYTIVGGRIVYARPGAA

Sequences:

>Translated_534_residues
MHADIVLVNGTVLTASSHTPVAEAIALRGEWILAVGAERVVHHFVGPATEVIDLQGRTVTPGFNDAHCHPIALGMSLREV
DARTPPNRSIEEIVQRIAQRAASQEPGTWIVARGYDQAHLAEGRHPTRDDLDRATQRHPVLLIRACGHIGVANSLALAIA
GIGPETPDPPGGTIDRGPDGQPTGVVREAALQLVRARLPQPSVEDLAEAIRLAGETFLSFGVTSVQEAGIRRAEEFLAYQ
SLAQRGTLPVRTSLMILINDLLEPCRELGLRTGFGDAWLRIGPAKLFLDGSIGGRTARMSQPYLDRDTLGLWMDEPDTMK
RKIVEAHCAGFQCCAHAIGDAAIELLLDAFEEALRRQPRPDHRHRIEHCSILRPDLVDRIARLGAVPIPGTTFLYDFQEV
YLSGLGHERLRYAYALRTFLDRGIVAAASSDTPVCSPNAMLGIQTMVTRRNAAGNVLWPEESITLEEAIRVYTLNGAYAS
FEERIKGTLEPGKLADVVVLETDLRSVQPEELGRVRVDYTIVGGRIVYARPGAA
>Mature_534_residues
MHADIVLVNGTVLTASSHTPVAEAIALRGEWILAVGAERVVHHFVGPATEVIDLQGRTVTPGFNDAHCHPIALGMSLREV
DARTPPNRSIEEIVQRIAQRAASQEPGTWIVARGYDQAHLAEGRHPTRDDLDRATQRHPVLLIRACGHIGVANSLALAIA
GIGPETPDPPGGTIDRGPDGQPTGVVREAALQLVRARLPQPSVEDLAEAIRLAGETFLSFGVTSVQEAGIRRAEEFLAYQ
SLAQRGTLPVRTSLMILINDLLEPCRELGLRTGFGDAWLRIGPAKLFLDGSIGGRTARMSQPYLDRDTLGLWMDEPDTMK
RKIVEAHCAGFQCCAHAIGDAAIELLLDAFEEALRRQPRPDHRHRIEHCSILRPDLVDRIARLGAVPIPGTTFLYDFQEV
YLSGLGHERLRYAYALRTFLDRGIVAAASSDTPVCSPNAMLGIQTMVTRRNAAGNVLWPEESITLEEAIRVYTLNGAYAS
FEERIKGTLEPGKLADVVVLETDLRSVQPEELGRVRVDYTIVGGRIVYARPGAA

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 58233; Mature: 58233

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHADIVLVNGTVLTASSHTPVAEAIALRGEWILAVGAERVVHHFVGPATEVIDLQGRTVT
CCCCEEEECCEEEEECCCCCHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEECCCCEEC
PGFNDAHCHPIALGMSLREVDARTPPNRSIEEIVQRIAQRAASQEPGTWIVARGYDQAHL
CCCCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH
AEGRHPTRDDLDRATQRHPVLLIRACGHIGVANSLALAIAGIGPETPDPPGGTIDRGPDG
HCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCCCC
QPTGVVREAALQLVRARLPQPSVEDLAEAIRLAGETFLSFGVTSVQEAGIRRAEEFLAYQ
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
SLAQRGTLPVRTSLMILINDLLEPCRELGLRTGFGDAWLRIGPAKLFLDGSIGGRTARMS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCEEEEEECCCCCCCCCCC
QPYLDRDTLGLWMDEPDTMKRKIVEAHCAGFQCCAHAIGDAAIELLLDAFEEALRRQPRP
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DHRHRIEHCSILRPDLVDRIARLGAVPIPGTTFLYDFQEVYLSGLGHERLRYAYALRTFL
CHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DRGIVAAASSDTPVCSPNAMLGIQTMVTRRNAAGNVLWPEESITLEEAIRVYTLNGAYAS
HCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCHHHCEEEEEECCHHHH
FEERIKGTLEPGKLADVVVLETDLRSVQPEELGRVRVDYTIVGGRIVYARPGAA
HHHHHCCCCCCCCCEEEEEEECCHHCCCHHHHCCEEEEEEEECCEEEEECCCCC
>Mature Secondary Structure
MHADIVLVNGTVLTASSHTPVAEAIALRGEWILAVGAERVVHHFVGPATEVIDLQGRTVT
CCCCEEEECCEEEEECCCCCHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEECCCCEEC
PGFNDAHCHPIALGMSLREVDARTPPNRSIEEIVQRIAQRAASQEPGTWIVARGYDQAHL
CCCCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH
AEGRHPTRDDLDRATQRHPVLLIRACGHIGVANSLALAIAGIGPETPDPPGGTIDRGPDG
HCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCCCC
QPTGVVREAALQLVRARLPQPSVEDLAEAIRLAGETFLSFGVTSVQEAGIRRAEEFLAYQ
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
SLAQRGTLPVRTSLMILINDLLEPCRELGLRTGFGDAWLRIGPAKLFLDGSIGGRTARMS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCEEEEEECCCCCCCCCCC
QPYLDRDTLGLWMDEPDTMKRKIVEAHCAGFQCCAHAIGDAAIELLLDAFEEALRRQPRP
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DHRHRIEHCSILRPDLVDRIARLGAVPIPGTTFLYDFQEVYLSGLGHERLRYAYALRTFL
CHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DRGIVAAASSDTPVCSPNAMLGIQTMVTRRNAAGNVLWPEESITLEEAIRVYTLNGAYAS
HCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCHHHCEEEEEECCHHHH
FEERIKGTLEPGKLADVVVLETDLRSVQPEELGRVRVDYTIVGGRIVYARPGAA
HHHHHCCCCCCCCCEEEEEEECCHHCCCHHHHCCEEEEEEEECCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]