Click here to switch to the map view.

The map label for this gene is ytcJ [H]

Identifier: 221632415

GI number: 221632415

Start: 387231

End: 388841

Strand: Reverse

Name: ytcJ [H]

Synonym: trd_0387

Alternate gene names: 221632415

Gene position: 388841-387231 (Counterclockwise)

Preceding gene: 221632416

Following gene: 221632414

Centisome position: 19.41

GC content: 65.3

Gene sequence:

>1611_bases
ATGGTGTGTGACCTGATCCTCCACAATGCCAACATCCTGACGCTCGACCCGGCGCAGCCACGCGCTCGGGCAGTCGCGAT
GAGCCACGGTCGCATCCTGGCTATCGGTGACGATCCGGAGATCCTCGGCTACCGTACGGCCCAGACCAGAGTTCTCGACC
TCGGGGGTGCCACGGTCTTGCCCGGTTTCGACGATGCTCACTGTCATCCGCTCGGTCTCGGGCTGTCTCTCGAGTGGGTC
GATGTTTCGCCGGTTGCCGCCCCGACGCTGGAGCGGCTCCTCGACGAAATCCGCAAGGCTGCGCAGGAACTGCCTCCCGA
CCGCTGGCTGCTCGCCCGAGGGTACGACGACACGCGGCTGGACGTTCAGCGACACCCCACGCGCTGGGAACTCGATCGCG
TCACGGGTAACCGGCCGACCATCGTCATCCGCACCTGTGGCCACATGCTGGTCGCCAACAGCGCGGCACTCGCGCGTGCC
GGTATCACACGGGAGACACCTGATCCGGAAGGCGGCAGGATCGTGCGCGACGAGACTGGTGAGCCGACCGGTCTCCTCCA
GGAACGAGCCCAAGAACTCGTCCGACGTCTCGTACCCGAGCCGACCGTCCGCGATCTGGAGCAAGCACTCCGGCGAGCCG
GTGACCGTTTCCTCGCGCTGGGGATCACCAGCGTCACCGAGGCCGGGATCAGTCGTCCGGAGGAACTCCTGGCCTACCAG
AACCTGCACCAGCGCGGCGAATTACCCGTACGGGCACGCATCATGCTGCTCATCGACCATCTCCTGGAACCAGCGGAGCG
CCTCGGACTTCGCAGCGGGTTCGGGGACGCCTGGCTGCGCATCGGTCCCTTCAAGCTCTTTCAGGACGGAGCCGGTGGTG
CCCGTACGGCAGCCATGAGCATCGCGTACCCTGAGGAACCAGACAATTACGGGCTCGCGTACTACACGCAGGACCAACTC
GACGAGGCCTTCCGACGAGTGGCCCGGCTCGGAGCGCAGGCAGCAGCGCACGCCATCGGTGATCGAGCGATCGAGATGGT
CCTCACCGCCTACGAGCGCGCTCTCCAGGCTCATCCGATCCACGACCATCGCTGGCGGATCGAGCACTGTGGCATGCTCC
GCCCTGATCTTTTGGAGCGCATGGCCCGTCTCGGTGTCGTCGCTGTGCCGCAACCGGCATTCGGTTACTACCTCGGTGAT
GCCTATCGGCGCAACTTCAGTGAGGAGTGGCTCGCTCTGGCCTACCCGACGCGTGCCTGGCTCGAACGAGGAATCGCCGT
CGCATTCAGCTCCGATGCACCGGTGATCTCGCCCGATCCTTGGGTCGGTATCCGAGCAGCAGTGCTGCGTCAGACACTGA
CCGGAGAACCGTTCGGTCCCGAGCAGCGGGTAACTGTCCTGGAAGCCATTCGCCTCTACACTGCTGGCGGCGCGTATGCC
AGCTTCGAGGAGCACCAGCGGGGTCGGATCACACCAGGCTTCCTGGCCGATCTCCTCGTCGTCGATCGCGATCCGCTCGC
GATCGATCCGGAGGAACTCCCGACCCTCCGTACCCTCCTGACAGTCGTCGACGGCCGGATCGCCTGGAAGGCAGCGGACG
CAGTATTCTAG

Upstream 100 bases:

>100_bases
GGAACTCGGTCGCGTCCGCGTCGATTACACCATCGTCGGGGGACGGATCGTCTATGCTCGTCCTGGCGCAGCGTGACGGA
CAGAAAGGGAGCATGCACCC

Downstream 100 bases:

>100_bases
GAAGCGACGGACCAGACCGGGACGAAGGGAGGGACAGCCACCATGGCGGTGACCGTACGGTACCTCGGGCACGCTGCGTT
TGCGGTCGAAGCCGAGGGCA

Product: amidohydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MVCDLILHNANILTLDPAQPRARAVAMSHGRILAIGDDPEILGYRTAQTRVLDLGGATVLPGFDDAHCHPLGLGLSLEWV
DVSPVAAPTLERLLDEIRKAAQELPPDRWLLARGYDDTRLDVQRHPTRWELDRVTGNRPTIVIRTCGHMLVANSAALARA
GITRETPDPEGGRIVRDETGEPTGLLQERAQELVRRLVPEPTVRDLEQALRRAGDRFLALGITSVTEAGISRPEELLAYQ
NLHQRGELPVRARIMLLIDHLLEPAERLGLRSGFGDAWLRIGPFKLFQDGAGGARTAAMSIAYPEEPDNYGLAYYTQDQL
DEAFRRVARLGAQAAAHAIGDRAIEMVLTAYERALQAHPIHDHRWRIEHCGMLRPDLLERMARLGVVAVPQPAFGYYLGD
AYRRNFSEEWLALAYPTRAWLERGIAVAFSSDAPVISPDPWVGIRAAVLRQTLTGEPFGPEQRVTVLEAIRLYTAGGAYA
SFEEHQRGRITPGFLADLLVVDRDPLAIDPEELPTLRTLLTVVDGRIAWKAADAVF

Sequences:

>Translated_536_residues
MVCDLILHNANILTLDPAQPRARAVAMSHGRILAIGDDPEILGYRTAQTRVLDLGGATVLPGFDDAHCHPLGLGLSLEWV
DVSPVAAPTLERLLDEIRKAAQELPPDRWLLARGYDDTRLDVQRHPTRWELDRVTGNRPTIVIRTCGHMLVANSAALARA
GITRETPDPEGGRIVRDETGEPTGLLQERAQELVRRLVPEPTVRDLEQALRRAGDRFLALGITSVTEAGISRPEELLAYQ
NLHQRGELPVRARIMLLIDHLLEPAERLGLRSGFGDAWLRIGPFKLFQDGAGGARTAAMSIAYPEEPDNYGLAYYTQDQL
DEAFRRVARLGAQAAAHAIGDRAIEMVLTAYERALQAHPIHDHRWRIEHCGMLRPDLLERMARLGVVAVPQPAFGYYLGD
AYRRNFSEEWLALAYPTRAWLERGIAVAFSSDAPVISPDPWVGIRAAVLRQTLTGEPFGPEQRVTVLEAIRLYTAGGAYA
SFEEHQRGRITPGFLADLLVVDRDPLAIDPEELPTLRTLLTVVDGRIAWKAADAVF
>Mature_536_residues
MVCDLILHNANILTLDPAQPRARAVAMSHGRILAIGDDPEILGYRTAQTRVLDLGGATVLPGFDDAHCHPLGLGLSLEWV
DVSPVAAPTLERLLDEIRKAAQELPPDRWLLARGYDDTRLDVQRHPTRWELDRVTGNRPTIVIRTCGHMLVANSAALARA
GITRETPDPEGGRIVRDETGEPTGLLQERAQELVRRLVPEPTVRDLEQALRRAGDRFLALGITSVTEAGISRPEELLAYQ
NLHQRGELPVRARIMLLIDHLLEPAERLGLRSGFGDAWLRIGPFKLFQDGAGGARTAAMSIAYPEEPDNYGLAYYTQDQL
DEAFRRVARLGAQAAAHAIGDRAIEMVLTAYERALQAHPIHDHRWRIEHCGMLRPDLLERMARLGVVAVPQPAFGYYLGD
AYRRNFSEEWLALAYPTRAWLERGIAVAFSSDAPVISPDPWVGIRAAVLRQTLTGEPFGPEQRVTVLEAIRLYTAGGAYA
SFEEHQRGRITPGFLADLLVVDRDPLAIDPEELPTLRTLLTVVDGRIAWKAADAVF

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 59385; Mature: 59385

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVCDLILHNANILTLDPAQPRARAVAMSHGRILAIGDDPEILGYRTAQTRVLDLGGATVL
CEEEEEEECCCEEEECCCCCHHHHEEECCCEEEEECCCCCEEEEECCCEEEEECCCCEEC
PGFDDAHCHPLGLGLSLEWVDVSPVAAPTLERLLDEIRKAAQELPPDRWLLARGYDDTRL
CCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEE
DVQRHPTRWELDRVTGNRPTIVIRTCGHMLVANSAALARAGITRETPDPEGGRIVRDETG
CCCCCCCCEEEECCCCCCCEEEEEECCCHHHCCCHHHHHCCCCCCCCCCCCCEEEECCCC
EPTGLLQERAQELVRRLVPEPTVRDLEQALRRAGDRFLALGITSVTEAGISRPEELLAYQ
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHH
NLHQRGELPVRARIMLLIDHLLEPAERLGLRSGFGDAWLRIGPFKLFQDGAGGARTAAMS
HHHHCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEECCHHEEECCCCCCCCEEEE
IAYPEEPDNYGLAYYTQDQLDEAFRRVARLGAQAAAHAIGDRAIEMVLTAYERALQAHPI
EECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HDHRWRIEHCGMLRPDLLERMARLGVVAVPQPAFGYYLGDAYRRNFSEEWLALAYPTRAW
CCCCEEHHHCCCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCHHHEEEECCHHHH
LERGIAVAFSSDAPVISPDPWVGIRAAVLRQTLTGEPFGPEQRVTVLEAIRLYTAGGAYA
HHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
SFEEHQRGRITPGFLADLLVVDRDPLAIDPEELPTLRTLLTVVDGRIAWKAADAVF
CHHHHCCCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCCEEEHHCCCC
>Mature Secondary Structure
MVCDLILHNANILTLDPAQPRARAVAMSHGRILAIGDDPEILGYRTAQTRVLDLGGATVL
CEEEEEEECCCEEEECCCCCHHHHEEECCCEEEEECCCCCEEEEECCCEEEEECCCCEEC
PGFDDAHCHPLGLGLSLEWVDVSPVAAPTLERLLDEIRKAAQELPPDRWLLARGYDDTRL
CCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEE
DVQRHPTRWELDRVTGNRPTIVIRTCGHMLVANSAALARAGITRETPDPEGGRIVRDETG
CCCCCCCCEEEECCCCCCCEEEEEECCCHHHCCCHHHHHCCCCCCCCCCCCCEEEECCCC
EPTGLLQERAQELVRRLVPEPTVRDLEQALRRAGDRFLALGITSVTEAGISRPEELLAYQ
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCHHHHHHHH
NLHQRGELPVRARIMLLIDHLLEPAERLGLRSGFGDAWLRIGPFKLFQDGAGGARTAAMS
HHHHCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEECCHHEEECCCCCCCCEEEE
IAYPEEPDNYGLAYYTQDQLDEAFRRVARLGAQAAAHAIGDRAIEMVLTAYERALQAHPI
EECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HDHRWRIEHCGMLRPDLLERMARLGVVAVPQPAFGYYLGDAYRRNFSEEWLALAYPTRAW
CCCCEEHHHCCCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCHHHEEEECCHHHH
LERGIAVAFSSDAPVISPDPWVGIRAAVLRQTLTGEPFGPEQRVTVLEAIRLYTAGGAYA
HHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
SFEEHQRGRITPGFLADLLVVDRDPLAIDPEELPTLRTLLTVVDGRIAWKAADAVF
CHHHHCCCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCCEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]