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The map label for this gene is sufD [H]

Identifier: 221632407

GI number: 221632407

Start: 380728

End: 382065

Strand: Reverse

Name: sufD [H]

Synonym: trd_0379

Alternate gene names: 221632407

Gene position: 382065-380728 (Counterclockwise)

Preceding gene: 221632408

Following gene: 221632406

Centisome position: 19.07

GC content: 62.63

Gene sequence:

>1338_bases
ATGAGCACGAGGGTCGCAGAACGAACACGAGGCTTCACGCGTGAGGCAGTCGAGGAACTTTCTCACCTCCTCGACGAGCC
AGCCTGGTTGCGAGAACGGCGTCTCGCCGCCTGGGAGATCTACGAACGGACGCCGATGCCCAGCCGGACCGACGAGGAAT
GGCGACGGACCGACATTCGGCGCCTTCCGATCGATCAAGTCGTGCCCTTCGCCGGGGTCGGCCAGCGAGTGAGCGGGCCA
GACGTGCTCCCATCCGCTCTCTTCGAGATCCTGGGCGATGCCGCCTTGCGATCCGGGCTTCTGGTGCAGGTCGATAGCTC
CGTTGTCTTTACCCAGCTTGATCCGCAGCTCGCTGCCGAGGGCGTCGTCTTTACCGATCTCTTGACCGCAGCGCGCGACA
TGCCGGAACTCCTCCAGCGAGTCTTCATGACCGAAGCGGTGAAGCCGGAGGACAACAAGTTCGCAGCGCTGCACGGTGCC
TTTTGGAGCGGCGGAACCTTTCTGTACGTCCCGGAGGGTGTGGAGGTCGCTCTCCCGCTGCGCAGTTTCGTCTGGGCGGA
AACGCCGGGCTCGGCGATCTTCGCGCACACGCTTCTCGTCGCTGAACCAGGAGCCAGCGTCGTTCTGATCGACACCTGGG
CTTCTCCCACCGTCGAGGAGCCGTTGATCGCCTCCAATGTCGTCGAGATCATCACCGGCGAGGGTGCACAGGTTCGCTAC
ATCCAGCTGCAGGACTGGGGGCGGAGCGTCTGGAACTTCACGACACAACGAGCCCTCTTGCGGCAGGACGTGACCGTCAA
CACGCTGAACGTCAGCCTCGGCTCGCGGCTGAGCAAGGCATTCATCGCCAGCAATCTCGTGGGACCTGGTGCGACTGCCG
AAATGCTCGGGCTCTACTTCGCCGACGATGCGCAGCATCTCGATCACCAGACACGCCAGTGGCATGTCGCGCCCTATGCG
TCGAGCGACCTCCTGTACAAGGGAGCGCTCAAGGATCGGGCCCGCACCGTCTTCAGCGGGCTGATCAAGGTCTTCCCGCA
GGCCCAGCGCACCGACGCGTACCAAGCAAACCGCAACCTGATCCTTTCCCCGACCGCTCGGGCCGATACGATTCCGAACC
TCGAAATCGGCGCCAATGACGTGCGTTGCACGCATGGTGCCACTGTCGGCCAAGTGGAAGAGGAGTATATTTTCTACTTG
ATGAGCCGAGGCATCAGCCGACCAGAAGCGGTGAAGCTGATCGTCGATGGCTTCTTCGATGAGGTGATCGAGCGGGTGCC
CGTGACGGAGGTACAGGAGACCGTACGGGCAGCGATTGCGCGGAAAATCGGGCTATGA

Upstream 100 bases:

>100_bases
CTGAACCGGCTGATCGCGCTCGAGATGGAAGGTTCAGTCGGATGAGACGCAGGCGGTCTGGCTCGGTCCAGACCGCCGCA
CCGTCACCTGAGGGGAGATC

Downstream 100 bases:

>100_bases
CGTCGTTCACTGGAACGCAGCCACTCGACGTCGAGCGGATCCGAGGGGACTTCCCGATCTTCCAGCGGACGGTTCGCGGC
GGCAGACCCCTCGTGTATCT

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSTRVAERTRGFTREAVEELSHLLDEPAWLRERRLAAWEIYERTPMPSRTDEEWRRTDIRRLPIDQVVPFAGVGQRVSGP
DVLPSALFEILGDAALRSGLLVQVDSSVVFTQLDPQLAAEGVVFTDLLTAARDMPELLQRVFMTEAVKPEDNKFAALHGA
FWSGGTFLYVPEGVEVALPLRSFVWAETPGSAIFAHTLLVAEPGASVVLIDTWASPTVEEPLIASNVVEIITGEGAQVRY
IQLQDWGRSVWNFTTQRALLRQDVTVNTLNVSLGSRLSKAFIASNLVGPGATAEMLGLYFADDAQHLDHQTRQWHVAPYA
SSDLLYKGALKDRARTVFSGLIKVFPQAQRTDAYQANRNLILSPTARADTIPNLEIGANDVRCTHGATVGQVEEEYIFYL
MSRGISRPEAVKLIVDGFFDEVIERVPVTEVQETVRAAIARKIGL

Sequences:

>Translated_445_residues
MSTRVAERTRGFTREAVEELSHLLDEPAWLRERRLAAWEIYERTPMPSRTDEEWRRTDIRRLPIDQVVPFAGVGQRVSGP
DVLPSALFEILGDAALRSGLLVQVDSSVVFTQLDPQLAAEGVVFTDLLTAARDMPELLQRVFMTEAVKPEDNKFAALHGA
FWSGGTFLYVPEGVEVALPLRSFVWAETPGSAIFAHTLLVAEPGASVVLIDTWASPTVEEPLIASNVVEIITGEGAQVRY
IQLQDWGRSVWNFTTQRALLRQDVTVNTLNVSLGSRLSKAFIASNLVGPGATAEMLGLYFADDAQHLDHQTRQWHVAPYA
SSDLLYKGALKDRARTVFSGLIKVFPQAQRTDAYQANRNLILSPTARADTIPNLEIGANDVRCTHGATVGQVEEEYIFYL
MSRGISRPEAVKLIVDGFFDEVIERVPVTEVQETVRAAIARKIGL
>Mature_444_residues
STRVAERTRGFTREAVEELSHLLDEPAWLRERRLAAWEIYERTPMPSRTDEEWRRTDIRRLPIDQVVPFAGVGQRVSGPD
VLPSALFEILGDAALRSGLLVQVDSSVVFTQLDPQLAAEGVVFTDLLTAARDMPELLQRVFMTEAVKPEDNKFAALHGAF
WSGGTFLYVPEGVEVALPLRSFVWAETPGSAIFAHTLLVAEPGASVVLIDTWASPTVEEPLIASNVVEIITGEGAQVRYI
QLQDWGRSVWNFTTQRALLRQDVTVNTLNVSLGSRLSKAFIASNLVGPGATAEMLGLYFADDAQHLDHQTRQWHVAPYAS
SDLLYKGALKDRARTVFSGLIKVFPQAQRTDAYQANRNLILSPTARADTIPNLEIGANDVRCTHGATVGQVEEEYIFYLM
SRGISRPEAVKLIVDGFFDEVIERVPVTEVQETVRAAIARKIGL

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=465, Percent_Identity=26.4516129032258, Blast_Score=175, Evalue=6e-45,
Organism=Escherichia coli, GI1787971, Length=410, Percent_Identity=29.2682926829268, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 49297; Mature: 49165

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRVAERTRGFTREAVEELSHLLDEPAWLRERRLAAWEIYERTPMPSRTDEEWRRTDIR
CCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
RLPIDQVVPFAGVGQRVSGPDVLPSALFEILGDAALRSGLLVQVDSSVVFTQLDPQLAAE
CCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCHHHHHC
GVVFTDLLTAARDMPELLQRVFMTEAVKPEDNKFAALHGAFWSGGTFLYVPEGVEVALPL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEECCCEEEEECCCCEEEECH
RSFVWAETPGSAIFAHTLLVAEPGASVVLIDTWASPTVEEPLIASNVVEIITGEGAQVRY
HHHHCCCCCCCHHHHHEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEE
IQLQDWGRSVWNFTTQRALLRQDVTVNTLNVSLGSRLSKAFIASNLVGPGATAEMLGLYF
EEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
ADDAQHLDHQTRQWHVAPYASSDLLYKGALKDRARTVFSGLIKVFPQAQRTDAYQANRNL
CCCHHHHCCCCCEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHCCHHHCCCCE
ILSPTARADTIPNLEIGANDVRCTHGATVGQVEEEYIFYLMSRGISRPEAVKLIVDGFFD
EECCCCCCCCCCCCEECCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
EVIERVPVTEVQETVRAAIARKIGL
HHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STRVAERTRGFTREAVEELSHLLDEPAWLRERRLAAWEIYERTPMPSRTDEEWRRTDIR
CCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
RLPIDQVVPFAGVGQRVSGPDVLPSALFEILGDAALRSGLLVQVDSSVVFTQLDPQLAAE
CCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCHHHHHC
GVVFTDLLTAARDMPELLQRVFMTEAVKPEDNKFAALHGAFWSGGTFLYVPEGVEVALPL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEECCCEEEEECCCCEEEECH
RSFVWAETPGSAIFAHTLLVAEPGASVVLIDTWASPTVEEPLIASNVVEIITGEGAQVRY
HHHHCCCCCCCHHHHHEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEE
IQLQDWGRSVWNFTTQRALLRQDVTVNTLNVSLGSRLSKAFIASNLVGPGATAEMLGLYF
EEEEHHCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
ADDAQHLDHQTRQWHVAPYASSDLLYKGALKDRARTVFSGLIKVFPQAQRTDAYQANRNL
CCCHHHHCCCCCEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHCCHHHCCCCE
ILSPTARADTIPNLEIGANDVRCTHGATVGQVEEEYIFYLMSRGISRPEAVKLIVDGFFD
EECCCCCCCCCCCCEECCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
EVIERVPVTEVQETVRAAIARKIGL
HHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]