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The map label for this gene is nifU [H]

Identifier: 221632405

GI number: 221632405

Start: 379069

End: 379449

Strand: Reverse

Name: nifU [H]

Synonym: trd_0377

Alternate gene names: 221632405

Gene position: 379449-379069 (Counterclockwise)

Preceding gene: 221632406

Following gene: 221632404

Centisome position: 18.94

GC content: 59.58

Gene sequence:

>381_bases
GTGGCCGAACTTTACCGCGAGCACATCCTGGACCATTACCAGCATCCCCGGAACTACGGGACCCTGGAACGACCGGACCG
CACTTTCGAGGATTCCAATCCGCTGTGCGGTGATCGGATCCGCATCGATCTCAAGCTGGAGAACGACCGGATCGCCGACA
TTCGCTTTACCGGCCGTGGTTGCGCGATCAGTCAGGCTGCGGCGTCGATCTTGACCGAAATGGTGAAAGGGAAAACGCTC
GAGGAGGTCAAACAGCTGGGAGCTCAGGATCTTCTCGAAGAGCTCGGTGTCCCCATCAGTCCGGCGCGGCGCAAGTGCGC
TCTGCTCAGCCTGAAAGTACTCAAAGCAGCCGCCTATGGCCTCAACGAATGGCCGACGTGA

Upstream 100 bases:

>100_bases
TACAATGCCGAGGACGACGTGGATCGCCTCATCGAGGCACTCCGCGAGGTACGTCGCGTTTTCGGCGTCGCGGGGTGAGC
GGCTGACTGGAGGAGAGGCT

Downstream 100 bases:

>100_bases
TCGGTACGAAGGGACGCGACCCGATGCAGAAGCGATCCGACGACCTTGCGCGCCGCTTGTTCGGCGATTCCACAACAGAA
GGAGGCGAGATGGCGAAGTT

Product: SUF system FeS assembly protein, NifU family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MAELYREHILDHYQHPRNYGTLERPDRTFEDSNPLCGDRIRIDLKLENDRIADIRFTGRGCAISQAAASILTEMVKGKTL
EEVKQLGAQDLLEELGVPISPARRKCALLSLKVLKAAAYGLNEWPT

Sequences:

>Translated_126_residues
MAELYREHILDHYQHPRNYGTLERPDRTFEDSNPLCGDRIRIDLKLENDRIADIRFTGRGCAISQAAASILTEMVKGKTL
EEVKQLGAQDLLEELGVPISPARRKCALLSLKVLKAAAYGLNEWPT
>Mature_125_residues
AELYREHILDHYQHPRNYGTLERPDRTFEDSNPLCGDRIRIDLKLENDRIADIRFTGRGCAISQAAASILTEMVKGKTLE
EVKQLGAQDLLEELGVPISPARRKCALLSLKVLKAAAYGLNEWPT

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=130, Percent_Identity=35.3846153846154, Blast_Score=85, Evalue=1e-17,
Organism=Homo sapiens, GI24307953, Length=124, Percent_Identity=34.6774193548387, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788878, Length=117, Percent_Identity=35.8974358974359, Blast_Score=86, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17543474, Length=117, Percent_Identity=29.9145299145299, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6325122, Length=119, Percent_Identity=33.6134453781513, Blast_Score=78, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=30.8943089430894, Blast_Score=73, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355597, Length=118, Percent_Identity=37.2881355932203, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14219; Mature: 14088

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELYREHILDHYQHPRNYGTLERPDRTFEDSNPLCGDRIRIDLKLENDRIADIRFTGRG
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCC
CAISQAAASILTEMVKGKTLEEVKQLGAQDLLEELGVPISPARRKCALLSLKVLKAAAYG
CHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
LNEWPT
CCCCCC
>Mature Secondary Structure 
AELYREHILDHYQHPRNYGTLERPDRTFEDSNPLCGDRIRIDLKLENDRIADIRFTGRG
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCC
CAISQAAASILTEMVKGKTLEEVKQLGAQDLLEELGVPISPARRKCALLSLKVLKAAAYG
CHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
LNEWPT
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]