| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632168
Identifier: 221632168
GI number: 221632168
Start: 140462
End: 142204
Strand: Reverse
Name: 221632168
Synonym: trd_0134
Alternate gene names: NA
Gene position: 142204-140462 (Counterclockwise)
Preceding gene: 221632169
Following gene: 221632167
Centisome position: 7.1
GC content: 59.67
Gene sequence:
>1743_bases GTGTTTCAATCCCTCTACCCCGCTGTCCGCGATCGCAACTGGGCCACCATTCCGACTCGGGTGACCGCTTGGTCCGTGAC CGGCCGAGACTACGAAGTGATCGTAACGCTTTCAGGAGTTTGCGGAAACGAGGAGATTGCGCTCGACTGGACGGGACAGG TCACTGCGAGTCAGGCTGGTCTTCTCCAGTACGCTTTTGAGGCACGTGCACGCAAGGATTTTTGGAAGAACCGAATTGGC CTCTGCATCCACATTCCAGCCACCTACGCAGGCGCTCCGGCTCGTGGCATCGCCCGGGACGGTACCGTCACGGACGGAGC ACTACCCGTTTCGATCGCCCCGCACCAACCGTTTCGCAACCTCGCACAATTTACGTTCACGCTTCCGGACAAGAGGCATT GTACGATCATTTTTGAGGGTGATATCTTTGAAATGGAAGATCAAAGAAATTGGTCTGACGCATCTTTTAAGATATACTCA ACGCCGCTGGATTTACCATTTCCGGTACTCGTTCATGAAGGACAGGTTCTCTTCCAGCGGGTCACAGCCCTGATTGAGCC CAAGGAGACAGCACCAGCGAAAGCTGAGTTGATCAGCCTCGACTGCGATCCTACACCTCTGACGCCAGTACCTTTCGGAA CCCAGCTTCCACCGCTGACCACCGCTGACGAGATGGATCGACTCACGCACTGCCTCGCCCTTCTCCAACCGGACCACCTC CGGCTTGACGTGCATGCCGCAAGCGTGCAGGCGGACTATCTCCGTGCTGCTGCTCATCTTGCCAAGCGCACGGCGACTCC GCTCCTCATTGCCCTCTACGCGACGGACCCCGCTCAGGTGCAGGAGGTCGTCCCCCTCCTCACTGCGCTGGATGCACCGC TGAAGGCACTGATGTTGCATCATCCGGCAGAAAAAGTGACACCTCCTGCCCTCCTTGCGGCACTCGGTGACGAACTCCAC CGAATCGGCCCTCTCCCACTCGCTGCCGGAACCGACTTCTTCTTCGCTGAACTGAACCGTGACCCGCACCCCTGGCCACA AGCGGACTGGATCGTCTTCACCATGACTCCCGGAGTACACGCACTGGACGATCGGAGTCTCCTGCTCAATGCGACGATTC AAGGGCAGGTCGTGGAGTCCGCTCGGGCCGTCGCCGGAGGGCGTCCCATCCTCGTCTCGCCCATCACGCTTCGCATGCGC AGAAATCCCAATGCCACGACCGGAGGTTGGGACATCCCGCGCGAGGAGCAAGTGGACCGGCGCCTTCACGCCGTTTTCGG CGCAGCGTGGTTGCTCCAAAGCCTGGCGAGCCTCGCAACCGCCCAACCGGTCGCCGTTACCTACTTCGAACTTGCCGGTA GTCTCGGTATCTTTGCAGAACATGGATCCGCTCCAGGAGACCGTCAAAACAGTGAAGAAACTCTCTCGTTCACCCCTCTC GCCAGCGTCATGCACCGGCTTCTCCGTACGGCGCGGAACGGTGCCCGCTGGTTCCGTGCTCGCTCGACGAATCCGGTCCA GATACAAACCCTCGGCATCCTGTTGCAGGAGCGCTGGGAACTTCTGATCGCGAATCCCTGGCCTTCTCCTCAGGTGGTCG AGATCACCCATCTTCCAGGCACCATAGAAGGCATTGACGCTCTTCATCCGCTGGCGAGTCCGTCGATGCCAGCGCTTTCT CAAGCGGTTCCACTGCTCGCTCTCCCACCGAATGCGGTCGTTGTCCTCTGGGGGCGACGATGA
Upstream 100 bases:
>100_bases GGGGGCACCCATGCTTCACTGGCTTCGTTGCGGCTCGCTTGCGTTCGCTCTTGACCTTTCAACTGGATGGCTTTGGCATC TCACAATGGACGGGGTAGAG
Downstream 100 bases:
>100_bases TCGAGAAGGACCGACTCCGACTTGCACTCATCGGGTGCGGGTACTTCGCTCGCTATCACGCTGCCGCCTGGCGCGTGATT CCGCAGGTCGAACTCGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MFQSLYPAVRDRNWATIPTRVTAWSVTGRDYEVIVTLSGVCGNEEIALDWTGQVTASQAGLLQYAFEARARKDFWKNRIG LCIHIPATYAGAPARGIARDGTVTDGALPVSIAPHQPFRNLAQFTFTLPDKRHCTIIFEGDIFEMEDQRNWSDASFKIYS TPLDLPFPVLVHEGQVLFQRVTALIEPKETAPAKAELISLDCDPTPLTPVPFGTQLPPLTTADEMDRLTHCLALLQPDHL RLDVHAASVQADYLRAAAHLAKRTATPLLIALYATDPAQVQEVVPLLTALDAPLKALMLHHPAEKVTPPALLAALGDELH RIGPLPLAAGTDFFFAELNRDPHPWPQADWIVFTMTPGVHALDDRSLLLNATIQGQVVESARAVAGGRPILVSPITLRMR RNPNATTGGWDIPREEQVDRRLHAVFGAAWLLQSLASLATAQPVAVTYFELAGSLGIFAEHGSAPGDRQNSEETLSFTPL ASVMHRLLRTARNGARWFRARSTNPVQIQTLGILLQERWELLIANPWPSPQVVEITHLPGTIEGIDALHPLASPSMPALS QAVPLLALPPNAVVVLWGRR
Sequences:
>Translated_580_residues MFQSLYPAVRDRNWATIPTRVTAWSVTGRDYEVIVTLSGVCGNEEIALDWTGQVTASQAGLLQYAFEARARKDFWKNRIG LCIHIPATYAGAPARGIARDGTVTDGALPVSIAPHQPFRNLAQFTFTLPDKRHCTIIFEGDIFEMEDQRNWSDASFKIYS TPLDLPFPVLVHEGQVLFQRVTALIEPKETAPAKAELISLDCDPTPLTPVPFGTQLPPLTTADEMDRLTHCLALLQPDHL RLDVHAASVQADYLRAAAHLAKRTATPLLIALYATDPAQVQEVVPLLTALDAPLKALMLHHPAEKVTPPALLAALGDELH RIGPLPLAAGTDFFFAELNRDPHPWPQADWIVFTMTPGVHALDDRSLLLNATIQGQVVESARAVAGGRPILVSPITLRMR RNPNATTGGWDIPREEQVDRRLHAVFGAAWLLQSLASLATAQPVAVTYFELAGSLGIFAEHGSAPGDRQNSEETLSFTPL ASVMHRLLRTARNGARWFRARSTNPVQIQTLGILLQERWELLIANPWPSPQVVEITHLPGTIEGIDALHPLASPSMPALS QAVPLLALPPNAVVVLWGRR >Mature_580_residues MFQSLYPAVRDRNWATIPTRVTAWSVTGRDYEVIVTLSGVCGNEEIALDWTGQVTASQAGLLQYAFEARARKDFWKNRIG LCIHIPATYAGAPARGIARDGTVTDGALPVSIAPHQPFRNLAQFTFTLPDKRHCTIIFEGDIFEMEDQRNWSDASFKIYS TPLDLPFPVLVHEGQVLFQRVTALIEPKETAPAKAELISLDCDPTPLTPVPFGTQLPPLTTADEMDRLTHCLALLQPDHL RLDVHAASVQADYLRAAAHLAKRTATPLLIALYATDPAQVQEVVPLLTALDAPLKALMLHHPAEKVTPPALLAALGDELH RIGPLPLAAGTDFFFAELNRDPHPWPQADWIVFTMTPGVHALDDRSLLLNATIQGQVVESARAVAGGRPILVSPITLRMR RNPNATTGGWDIPREEQVDRRLHAVFGAAWLLQSLASLATAQPVAVTYFELAGSLGIFAEHGSAPGDRQNSEETLSFTPL ASVMHRLLRTARNGARWFRARSTNPVQIQTLGILLQERWELLIANPWPSPQVVEITHLPGTIEGIDALHPLASPSMPALS QAVPLLALPPNAVVVLWGRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63514; Mature: 63514
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFQSLYPAVRDRNWATIPTRVTAWSVTGRDYEVIVTLSGVCGNEEIALDWTGQVTASQAG CCCCHHHHHHCCCCEECCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCCHHH LLQYAFEARARKDFWKNRIGLCIHIPATYAGAPARGIARDGTVTDGALPVSIAPHQPFRN HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH LAQFTFTLPDKRHCTIIFEGDIFEMEDQRNWSDASFKIYSTPLDLPFPVLVHEGQVLFQR HHHEEEECCCCCEEEEEEECCEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHH VTALIEPKETAPAKAELISLDCDPTPLTPVPFGTQLPPLTTADEMDRLTHCLALLQPDHL HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE RLDVHAASVQADYLRAAAHLAKRTATPLLIALYATDPAQVQEVVPLLTALDAPLKALMLH EEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHH HPAEKVTPPALLAALGDELHRIGPLPLAAGTDFFFAELNRDPHPWPQADWIVFTMTPGVH CCHHHCCHHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCCCCCCCCCEEEEEECCCCE ALDDRSLLLNATIQGQVVESARAVAGGRPILVSPITLRMRRNPNATTGGWDIPREEQVDR EECCCEEEEEEEECCHHHHHHHHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCHHHHHH RLHAVFGAAWLLQSLASLATAQPVAVTYFELAGSLGIFAEHGSAPGDRQNSEETLSFTPL HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCEEEEECCCCCCCCCCCCCEEEECHH ASVMHRLLRTARNGARWFRARSTNPVQIQTLGILLQERWELLIANPWPSPQVVEITHLPG HHHHHHHHHHHCCCHHEEEECCCCCEEEHHHHHHHHCCCEEEEECCCCCCCEEEEEECCC TIEGIDALHPLASPSMPALSQAVPLLALPPNAVVVLWGRR CCCCHHHHCCCCCCCCCHHHHCCCEEEECCCEEEEEECCC >Mature Secondary Structure MFQSLYPAVRDRNWATIPTRVTAWSVTGRDYEVIVTLSGVCGNEEIALDWTGQVTASQAG CCCCHHHHHHCCCCEECCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCCHHH LLQYAFEARARKDFWKNRIGLCIHIPATYAGAPARGIARDGTVTDGALPVSIAPHQPFRN HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH LAQFTFTLPDKRHCTIIFEGDIFEMEDQRNWSDASFKIYSTPLDLPFPVLVHEGQVLFQR HHHEEEECCCCCEEEEEEECCEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHH VTALIEPKETAPAKAELISLDCDPTPLTPVPFGTQLPPLTTADEMDRLTHCLALLQPDHL HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE RLDVHAASVQADYLRAAAHLAKRTATPLLIALYATDPAQVQEVVPLLTALDAPLKALMLH EEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHH HPAEKVTPPALLAALGDELHRIGPLPLAAGTDFFFAELNRDPHPWPQADWIVFTMTPGVH CCHHHCCHHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCCCCCCCCCEEEEEECCCCE ALDDRSLLLNATIQGQVVESARAVAGGRPILVSPITLRMRRNPNATTGGWDIPREEQVDR EECCCEEEEEEEECCHHHHHHHHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCHHHHHH RLHAVFGAAWLLQSLASLATAQPVAVTYFELAGSLGIFAEHGSAPGDRQNSEETLSFTPL HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCEEEEECCCCCCCCCCCCCEEEECHH ASVMHRLLRTARNGARWFRARSTNPVQIQTLGILLQERWELLIANPWPSPQVVEITHLPG HHHHHHHHHHHCCCHHEEEECCCCCEEEHHHHHHHHCCCEEEEECCCCCCCEEEEEECCC TIEGIDALHPLASPSMPALSQAVPLLALPPNAVVVLWGRR CCCCHHHHCCCCCCCCCHHHHCCCEEEECCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA