| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is 22126577
Identifier: 22126577
GI number: 22126577
Start: 2979489
End: 2981837
Strand: Reverse
Name: 22126577
Synonym: y2698
Alternate gene names: NA
Gene position: 2981837-2979489 (Counterclockwise)
Preceding gene: 22126578
Following gene: 22126576
Centisome position: 64.81
GC content: 56.49
Gene sequence:
>2349_bases ATGAATACCTTTCTCCCGACTATTCGGTTTGACCATAGCCACCACAAACTGGTGGTCCGCGACAGCACCGCCGCCGTTGA TGTGCTGGGCTTTGAAGGCCATGAAAGCCTGAGCCAGCCGTTCTGTTACGACATCCAATTCACCAGCGCCGACAAGGCGA TTGGCCCGGCGACCATGCTGATGCACGACGCGTCACTGACATTGGCGGCCCCGATGGCCGAAGCTTTTGGCGTGACGGTT CAGCAGACCCAGCGGGTGATCCAAGGGGTGGTGACCGGATTTAAACGCCTGTCGGCCTCGAAAGAGGAATGCCGCTACGA ACTGAGCCTGCAACCGCGCCTGGCCTTGTTGTCGCGCAGCCATCAGAACGGGATATATCAGGACATGTCGGTGCCGCAGA TTGTGGAAAAAATTCTGCGTGAGCGCCATGACATGCGCGGTCAGGATTTTGTCTTCACGCTGGCCCGCGAGTACCCACGC CGCGAGCAGGTAATGCAATACGGCGAGGATGACCTGACCTTTATCCGCCGCCTGCTGGCCGAGGTGGGGATCTGGTTTCG TTTTACCGCCGATCCCAAACTCAATATTGATGTGGTGGAGTTTTACGACGACCAGCGCTTCTATCAGCAAGGACTGACGC TACAGGCGGTGCCGCCTTCGGGGATGCACGACAGCGGGATGGAATCGGTCTGGGACCTGTCCAGCGCCCATCAGGTGGTG GAAAAATCGGTCAGTACCGGCGATTACAACTACCGCACCGCCACTGCCGACCTGACCGCCGGGGCCGACATCACGCGCGG CGATACCACCACCTACGGCGAAGCCTATCATTACGCCGATAACTATCTGACCGCAGGCAGCGAAGGGCGCGAGCCGGAAA GTGAAAGTGGGGCCTTTTATGCCCGTCTGCGCCATGAACGTTACCTCAATAATCAGGCGCGCTTCGCCGGGGTGGCCAAT GCGGCGGCACTGGCACCGGGTCAGGAACTGAACGTCACCGGCAACGACGTGCCAGCACAGTTTGGTAAAGGGGTGATAAT CACCCGCATCACCAGCCATGCCCGCCGCGACCGCAGCTATGAAGTACATTTTGAAGCCATTCCTTACTCCGAGGATTATT GCTTCCGTCCGGCGCTGATCCGCAAGCCGACCATGGCCGGGACCTTGCCGGCGCGGGTGACCAGTACCACTGCGAACGAC ACTTATGGTCATATCGACAAAGACGGGCGCTACCGTGTCAACCTGATGTTCGACCGTGACAGTTGGGAGTCGGGTTACGA AAGCTTGTGGGTCCGTCAGGCCCGCCCGTATGCGGGTGACAGCTACGGCCTGCACCTGCCGCTGCTGGCAGGCACCGAAG TGGCGATCGCGTTTGAAGACGGCAACCCGGACCGGCCGTATATCGCCTATGTGCTACACGACTCGGCGCACGGCGACCAT GTCACCATCAGCAACTACAAACGCAACGTACTGCGTACTCCGTCGAATAACAAACTGCGCCTGGAGGATGAACGGGGTAA AGAGCACATCAAGCTCAGCACCGAATATGGCGGCAAAAGCCAACTGAATCTGGGGCATTTGGTTGATAACGAGAAACAGC CTCGGGGTGAGGGTTTTGAGCTGCGCACCGACAGTTTTGGTGTATTACGGGCAGAAAAAGGCCTCTTTATCACTGCCGAC GGACAGGCCAAAGCACAGGGGCAGGTGCTGGAGATGCAACCGGCTATCAGCCTGTTGAAAAGTGCGCAGGAACAGATGGA GGCCATCTCCGCGGATGCACAAACCGCCACCGCCAGTCCGGCCGACCTACAGGTACAAATCAGTCTGTTGCAGCAAAATC TCACTGAACTGAAACAAGCTGTCCTGTTACTGAGTGCGCCAAAGGGGATCGCGTTGAGTAGCGGGGAGCATCTGCAAATG AGTGCCAGCGAAAATCTGATTGCCACCGCCGGTAAAAATGCCGACGTCAGCGTCGCGAAAAATTTCTTTATCGGCGTAGG CAATACCCTAAGTATCTTCGTCAGAAAGCTGGGGATGAAACTAATAGCCAATCAGGGGCCGATAACAGTCCAGGCGCAGA ATGATCTAATGGAGTTATTGGCGCGTAAAGCGATCACCATTACCAGCACCGAGGATGAGATAAAAATCACCGCCAAGAAG AGGATCACGCTGAATGCGGGAGGCAGTTATATCACGCTGGATGAGAATCGGATCGAGTCAGGAACGGCGGGGGAATATTT GACCAAAGCAGGGTATTACGGGCGGTTAGATAAGGCCAAACTCCCAACTGAATTTCCAGCCTTAGCCGCTAAAACTGAAG ACCCCATTAAACGTTGGCTATTCTCTTAA
Upstream 100 bases:
>100_bases AGCTGTTAAGCCGCATGAGCGAGCAACAGCGCACCACCTCGCTGACGCTGGGCTGGCATGAAGAAGATGGCATCACGCTG ACATTTGAGGGCGAATAAAA
Downstream 100 bases:
>100_bases CAGGACGTTAAAAATATGATTATCAGCCCTTTATTTTTAAAAGATAAGTCCAACTCAGAAGACGATGCTTCCTGGGTCTC CAGAATGATGCATGTAGATC
Product: hypothetical protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; VGR-Like Protein; Rhs-Family Protein; Rhs Family Protein; VgrG Protein; Rhs Element Vgr Related Protein; Vgr Related Protein; Replication/Virulence Associated Protein; Type VI Secretion System Rhs Element Vgr Protein; Rhs Element Vgr Family; VGR-Related Type VI Secretion System Protein; Rhs Accessory Genetic Element; Rhs Element Protein VgrE
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MNTFLPTIRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIGPATMLMHDASLTLAAPMAEAFGVTV QQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR REQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV EKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVAN AAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTAND TYGHIDKDGRYRVNLMFDRDSWESGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDH VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGVLRAEKGLFITAD GQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPADLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQM SASENLIATAGKNADVSVAKNFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKK RITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWLFS
Sequences:
>Translated_782_residues MNTFLPTIRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIGPATMLMHDASLTLAAPMAEAFGVTV QQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR REQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV EKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVAN AAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTAND TYGHIDKDGRYRVNLMFDRDSWESGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDH VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGVLRAEKGLFITAD GQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPADLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQM SASENLIATAGKNADVSVAKNFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKK RITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWLFS >Mature_782_residues MNTFLPTIRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIGPATMLMHDASLTLAAPMAEAFGVTV QQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR REQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV EKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVAN AAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTAND TYGHIDKDGRYRVNLMFDRDSWESGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDH VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGVLRAEKGLFITAD GQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPADLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQM SASENLIATAGKNADVSVAKNFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKK RITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWLFS
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86764; Mature: 86764
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTFLPTIRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIGPATML CCCCCCEEEECCCCCEEEEECCCCEEEEEECCCCHHHCCCEEEEEEECCCCCCCCCCEEE MHDASLTLAAPMAEAFGVTVQQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRS EECCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCEEEECCCCHHHHHHCC HQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFIRRLLA CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHCCCHHHHHHHHHHH EVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV HCCEEEEEECCCCCCEEEEEEECCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH EKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFY HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCH ARLRHERYLNNQARFAGVANAAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSY HHHHHHHHHCCCHHHHCCCCHHHCCCCCEEECCCCCCCHHHCCCEEEEEEHHHHHCCCCE EVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTANDTYGHIDKDGRYRVNLMFDRD EEEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECC SWESGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDH CCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCCE VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFE EEECCCCCCEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCEEHHHCCCCCCCCCCCEE LRTDSFGVLRAEKGLFITADGQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASP EECCCCEEEEECCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ADLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQMSASENLIATAGKNADVSVAK CCEEEEHHHHHHHHHHHHHHHEEEECCCCCEECCCCEEEEECCCCEEEECCCCCCCEEEC NFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKK EEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCEEEEECCCCCEEEEEEE RITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWL EEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH FS CC >Mature Secondary Structure MNTFLPTIRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIGPATML CCCCCCEEEECCCCCEEEEECCCCEEEEEECCCCHHHCCCEEEEEEECCCCCCCCCCEEE MHDASLTLAAPMAEAFGVTVQQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRS EECCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCEEEECCCCHHHHHHCC HQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFIRRLLA CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHCCCHHHHHHHHHHH EVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV HCCEEEEEECCCCCCEEEEEEECCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH EKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFY HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCH ARLRHERYLNNQARFAGVANAAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSY HHHHHHHHHCCCHHHHCCCCHHHCCCCCEEECCCCCCCHHHCCCEEEEEEHHHHHCCCCE EVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTANDTYGHIDKDGRYRVNLMFDRD EEEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECC SWESGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDH CCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCCE VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFE EEECCCCCCEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCEEHHHCCCCCCCCCCCEE LRTDSFGVLRAEKGLFITADGQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASP EECCCCEEEEECCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ADLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQMSASENLIATAGKNADVSVAK CCEEEEHHHHHHHHHHHHHHHEEEECCCCCEECCCCEEEEECCCCEEEECCCCCCCEEEC NFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKK EEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCEEEEECCCCCEEEEEEE RITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWL EEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH FS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA