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The map label for this gene is yciR [C]

Identifier: 221230413

GI number: 221230413

Start: 2115048

End: 2116919

Strand: Reverse

Name: yciR [C]

Synonym: MLBr_01750

Alternate gene names: 221230413

Gene position: 2116919-2115048 (Counterclockwise)

Preceding gene: 221230414

Following gene: 221230412

Centisome position: 64.78

GC content: 58.65

Gene sequence:

>1872_bases
ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAATGGCTGCAACAGCGGCCACCGCGGTCACGAT
CAGCGAAGGGGTGCTGGCTATCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAACCACGATATTC
ACGAGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTACGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCC
GACGCCGACCCGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCCGAGCCGGCCAATGCCGACTA
TCAGCGTCGCATCGAGGAGGGCGCCTCTGTGCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA
CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGATGAGTTGCGCGCGCTGCAGGCGATCGCAACT
CTTTTCGCCCAGCTGCAGGCCCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATCTCACAGGGCT
GCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGGCTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCC
TTGGCCTCGATCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGCTGATCGAGGTCTTCGCCGAT
AGGCTGCGCGAGGCTGCTGAAAGCCTAACGGTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC
GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGCTTCAAAAGCAAGTGGTGATCGACGGCGAAA
TACTCACCCGCACCGTCAGCATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCTACGTTGGGCT
GATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGGTCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCT
GAGAACTGAGGTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTACCTTCCTGAGGTAGACATGA
GTACCGGCAAAGTCTTGGGCACCGAGGCCTTGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT
ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGTGATGCACTCGGCATGTGCGGAATTCAGTCG
ATGGCGCTCAGCCGGCGTGGGACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCTGAAGGTTTCG
TTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGACGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTG
GTCCAAAACATCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCACCTGGCTATCGACGACTTCGG
TACCGGTTACAGCGTGTTGACCCATTTGAAATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC
TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTAGCCAAGGAATTTGAACTCGAAGTCGTCGCT
GAAGGCGTCGAGACTGCCGTTGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTCTGCTCTCACG
TCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAAGGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGG
AGCCGAGCGAACACCAGATACACCGATCGTAA

Upstream 100 bases:

>100_bases
TGGTGTTGCGATTGACTGTCGCGGGGCCTGCGTCGGTGCGGAGCCGCCGAAGTTTTGAACGCATCCGGTTGCTGTCGGGC
TAAGCGGTTATGGTAAGACC

Downstream 100 bases:

>100_bases
AACCCGAACGCCGACCCCAAACTTGCTTGGGTTTGTAAGCGCTGATCAAGAATTTTGGTAGTTTCTGCCTGACCGTTATC
GTCGATTGCATTAGGGTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 622

Protein sequence:

>623_residues
MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNNHDIHETKLIVEWPPRDYVPDPDPIGVVYFA
DADPVFAMAEYLKEPAVLRPEPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDDELRALQAIAT
LFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDERLADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFAD
RLREAAESLTVIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVSIGVATGLPGRDTTSDLLRWA
DHAALSAKSDGSKVVVLDHGISAQHTLRTEVELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF
IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVAEGFVDNVAGTLDEFGLDGSMVCLEITENVV
VQNIDATRKTLAGLKEVGVHLAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMALAKEFELEVVA
EGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAKGVIPMALGTCQSPEPSEHQIHRS

Sequences:

>Translated_623_residues
MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNNHDIHETKLIVEWPPRDYVPDPDPIGVVYFA
DADPVFAMAEYLKEPAVLRPEPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDDELRALQAIAT
LFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDERLADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFAD
RLREAAESLTVIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVSIGVATGLPGRDTTSDLLRWA
DHAALSAKSDGSKVVVLDHGISAQHTLRTEVELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF
IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVAEGFVDNVAGTLDEFGLDGSMVCLEITENVV
VQNIDATRKTLAGLKEVGVHLAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMALAKEFELEVVA
EGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAKGVIPMALGTCQSPEPSEHQIHRS
>Mature_622_residues
TRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNNHDIHETKLIVEWPPRDYVPDPDPIGVVYFAD
ADPVFAMAEYLKEPAVLRPEPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDDELRALQAIATL
FAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDERLADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADR
LREAAESLTVIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVSIGVATGLPGRDTTSDLLRWAD
HAALSAKSDGSKVVVLDHGISAQHTLRTEVELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSFI
PVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVAEGFVDNVAGTLDEFGLDGSMVCLEITENVVV
QNIDATRKTLAGLKEVGVHLAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMALAKEFELEVVAE
GVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAKGVIPMALGTCQSPEPSEHQIHRS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=33.7182448036951, Blast_Score=225, Evalue=6e-60,
Organism=Escherichia coli, GI87081921, Length=440, Percent_Identity=31.8181818181818, Blast_Score=212, Evalue=7e-56,
Organism=Escherichia coli, GI1787055, Length=453, Percent_Identity=28.476821192053, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI226510982, Length=448, Percent_Identity=28.3482142857143, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=35.9504132231405, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1786507, Length=223, Percent_Identity=36.322869955157, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=30.8943089430894, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=29.1497975708502, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081980, Length=269, Percent_Identity=31.9702602230483, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081845, Length=230, Percent_Identity=31.7391304347826, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=207, Percent_Identity=32.8502415458937, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87082096, Length=196, Percent_Identity=33.6734693877551, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=38.0116959064327, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI87081977, Length=242, Percent_Identity=29.3388429752066, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=31.6091954022989, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788381, Length=434, Percent_Identity=24.1935483870968, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=27.9761904761905, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=31.3253012048193, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=26.271186440678, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI87082007, Length=149, Percent_Identity=30.8724832214765, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=33.0188679245283, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 67464; Mature: 67333

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNNHDIHETKLIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEE
EWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRPEPANADYQRRIEEGASVPAV
ECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCH
SLACVPLLSGEITTGVLGFVKYGDREWHDDELRALQAIATLFAQLQARIVAEEQLRYLAE
HHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDDLTGLLNRRALIAHLDERLADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFAD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHH
RLREAAESLTVIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS
HHHHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHEEE
IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTEVELHLAGMID
EEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHEEEEEEECCHH
TDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSFIPVAESINLAGKLGRMVMHS
HHHHHHHCCCCCCCCCCEECCHHHEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH
ACAEFSRWRSAGVGLDALLRINVSPVQLVAEGFVDNVAGTLDEFGLDGSMVCLEITENVV
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH
VQNIDATRKTLAGLKEVGVHLAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASD
HCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCEEECCHHHHHHHCCCCHH
LAIVRAIMALAKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHC
GVIPMALGTCQSPEPSEHQIHRS
CCHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNNHDIHETKLIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEE
EWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRPEPANADYQRRIEEGASVPAV
ECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCH
SLACVPLLSGEITTGVLGFVKYGDREWHDDELRALQAIATLFAQLQARIVAEEQLRYLAE
HHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDDLTGLLNRRALIAHLDERLADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFAD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHH
RLREAAESLTVIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS
HHHHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHEEE
IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTEVELHLAGMID
EEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHEEEEEEECCHH
TDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSFIPVAESINLAGKLGRMVMHS
HHHHHHHCCCCCCCCCCEECCHHHEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH
ACAEFSRWRSAGVGLDALLRINVSPVQLVAEGFVDNVAGTLDEFGLDGSMVCLEITENVV
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH
VQNIDATRKTLAGLKEVGVHLAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASD
HCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCEEECCHHHHHHHCCCCHH
LAIVRAIMALAKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHC
GVIPMALGTCQSPEPSEHQIHRS
CCHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]