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The map label for this gene is rimM

Identifier: 221230328

GI number: 221230328

Start: 1939378

End: 1939917

Strand: Reverse

Name: rimM

Synonym: MLBr_01616

Alternate gene names: 221230328

Gene position: 1939917-1939378 (Counterclockwise)

Preceding gene: 221230329

Following gene: 221230327

Centisome position: 59.36

GC content: 57.59

Gene sequence:

>540_bases
GTGCATGCTCATGGTGCTTTGTTGGAGTTGACAATCGGGCGGGTGGTGAAAGCGCACGGTATCGGTGGGGAAGTGGTCGT
TGAGATTCGTACCGACGATCCAGCTTCCCGGTTCTGTCCGGGTAATATATTGCGCGCCAAGGATTTTCCACGTGGTGGCC
CAGAACGAAGATACACCGTCGTCTATGCGCGTGAGCACGGTGCGCGGCTTCTTGTGCGATTGGCCGGAGTGAGTGACCGT
GACGCCGCCGACGCGTTGCGGGGCAGTTTGTTCGTCATCGATTCCCTCGACTTGCCGCCGATCGATGAGCCGGATACTTA
TTACGACCACCAGCTCGAAGGTCTGCAGGTTCGTACCATGATGGGACGAGACGTTGGTGTCGTTGCTGAGGTGCTTCACA
CTGCGGCCGGTGAGTTGTTGGCGGTGCGATGTGATTCCGGCGAAGTACTAGTGCCGTTTGTCGGTGCGATTGTCAAGTTG
GTGTCTCTAGACGACGGCATAGTCGAAATCGACCCGCCCAAGGGCCTGCTGGATCTATGA

Upstream 100 bases:

>100_bases
GGTCGTGGAGGACGTACTGCAACCGCGTTGCGCAAGTTGGTCGCCGGCATCGGTGGCCGCGGTATCCGCGTCGATGTGGT
AGACACCGACCAGTAGCTGA

Downstream 100 bases:

>100_bases
AAATCGATATTGTCACGATTTTCCCGGCTTACCTAGACCCGCTGCGGCAATCGTTGCCGGGCAAGGCGATTGAGTCGGGC
CTGGTCGATGTGCAGGTGCA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGARLLVRLAGVSDR
DAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKL
VSLDDGIVEIDPPKGLLDL

Sequences:

>Translated_179_residues
MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGARLLVRLAGVSDR
DAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKL
VSLDDGIVEIDPPKGLLDL
>Mature_179_residues
MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGARLLVRLAGVSDR
DAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKL
VSLDDGIVEIDPPKGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=176, Percent_Identity=31.25, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_MYCLB (B8ZRW7)

Other databases:

- EMBL:   FM211192
- RefSeq:   YP_002503744.1
- ProteinModelPortal:   B8ZRW7
- SMR:   B8ZRW7
- EnsemblBacteria:   EBMYCT00000087142
- GeneID:   7327279
- GenomeReviews:   FM211192_GR
- GeneTree:   EBGT00050000017443
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19295; Mature: 19295

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV
CCCCCEEEEEEHHHEEEECCCCCEEEEEEECCCCHHHCCCCCEEECCCCCCCCCCCEEEE
VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM
EEEECCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL
CCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV
CCCCCEEEEEEHHHEEEECCCCCEEEEEEECCCCHHHCCCCCEEECCCCCCCCCCCEEEE
VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM
EEEECCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL
CCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA