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The map label for this gene is choD

Identifier: 221229594

GI number: 221229594

Start: 483460

End: 485169

Strand: Direct

Name: choD

Synonym: MLBr_00389

Alternate gene names: NA

Gene position: 483460-485169 (Clockwise)

Preceding gene: 221229593

Following gene: 221229598

Centisome position: 14.79

GC content: 61.75

Gene sequence:

>1710_bases
ATGAAGCCGGATTATGACGTCTTAATCATCGGTTCAGGGTTTGGCGGCAGTGTCAGTGCGCTGCGGCTCACGGAAAAAGG
TTACCGGGTCGGTGTTTTGGAGGCGGGCCGTCGCTTCGCCGACGAGGATTTTGCCAAGACGTCCTGGGATCTGCGTAAAT
TCCTCTGGGCGCCGAAGCTGGGCTGCTACGGCATCCAACGCATTCACCTGCTGCGCAACGTGATGATATTGGCCGGCGCC
GGAGTGGGAGGCGGTTCGTTGAACTACGCGAATACGTTGTACGTTCCGCCGGAGCCGTTCTTTGCCAACCAGCAGTGGGC
GCACATCACCGACTGGCACAGCGAGCTGGCGCCGCATTACGACCAGGCGCAGCGGATGTTAGGTGTGGTTTGTAACCCGA
CCTTCACCGACGCCGACCGGATACTCAAAGAGGTTGTCGATGAGATGGGGTTTGGCGACACCTTTGTGCCGACGCCGGTG
GGGGTGTTTTTCGGCCCTGATGGCACTCAGACGCCGGGTCGGACCGTGGCCGACCCGTATTTCGGCGGCGTGGGGCCAGT
GCGCACCGGCTGCCTGGAATGTGGTTGCTGTATGACGGGTTGTCGCCACGGTGCCAAGAACACGTTGGTGAAAAATTACC
TTGGTCTAGCGGAATCAGCAGGTGCGCAAGTGATTCCGATGACGACGGTGAAAGGATTCGAACTGCGGTCCGAGGGGCTG
TGGGAAGTTCATACGGTCCGCACCGGCAGTTGGCTGCGCAGGGGCAGACGCACGTTTACCGCTGCACACCTGCTGCTGGC
CGCCGGCACGTGGGGGACGCAACGTTTGCTGTTCAGGATGCGTGACCAAGGTAAGTTGCCTCGTCTGTCGCAGCGCTTGG
GTGTGTTGACTCGGACAAACTCGGAGTCGATTGTCGGTGCTGGGACCTTGAACGTCATGCCTGACCGGGACCTGACGCAT
GGCGTGGCGATCACGTCGTCGATTCACCCGACGTCGGACACGCATATCGAACCCATACGCTACGGCAAGGGGTCCAACGC
GATGGGATTGTTGCAGACCTTGATGACTGACGGGCCCGGTCCCGAGGGCACCGATGTGCCGCGCTGGAGGCAGTTATTGC
ATCAGGCCAGCGAAGATCCGCGCCGCATGCTGCGGCTGATTAATCCCCGTCGGTGGAGCGAACGCACGGTGATCGCGTTG
GTGATGCAGCACTTGGATAACTCGATCACCACGTTTACCAAGCGGGGGAAACTGGGCATCCGTTGGTACTCCAGCAAACA
GGGGAACGGAGAACCGAACCCGTCGTGGATCCCGATCGGCAACGAGGTCACCCGCCGTCTAGCCGCCAAGATCGACGGCG
TGGCCGGCGGTACCTGGGGCGAGCTTTTCAACATCCCGCTGACCGCGCACTTTCTTGGCGGTGCGGTGATTGGCGACAAC
GCTGAACACGGGGTGATAGACCCCTACCATCGAGTCTACGGCTATCCTACACTGTACGTGGTGGACGGCGCAGCGATTTC
GGCGAACCTGGGCGTCAACCCATCGTTGTCTATCGCTGCGCAAGCTGAGCGTGCAGCCTCCTTGTGGCCCAACAAGGGCC
AGCACGATCAGCGCCCTCGGCAGGGTGAGTCGTACCGTCGGCTGGCCCCGATCGCCCCGGACCACCCGGTGGTGCCCGCC
GAAGCGCCGGGAGCGCTGCGGTGGCTATAG

Upstream 100 bases:

>100_bases
GAATTCCAGAAGGTCGGTCTGATCGTCAGCATCTGAGGTTCGGTCGCCAAACGTGCGACCAGCCCGCACGCTGGTGCCTA
AGGCGGGTCATACTGGGGCG

Downstream 100 bases:

>100_bases
CCATTGATCCGGACGGGTGGGTAACGCTGGATGACGCCACTGCGTTGGCTGAGGCTCAGTGGCGCACAGCTTACTATCCG
ACTGTGTTCGTCGTGCATGT

Product: putative cholesterol oxidase

Products: NA

Alternate protein names: Glucose-Methanol-Choline Oxidoreductase; FAD Dependent Oxidoreductase; GMC Oxidoreductase; Oxidoreductase; Choline Dehydrogenase-Like Flavoprotein; Choline Dehydrogenase; Oxidase; Cholesterol Oxidase ChoD; Gluconate 2-Dehydrogenase; Cholesterol-O2 Oxidoreductase; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Oxidoreductase Glucose-Methanol-Choline Family; GMC Oxidoreductase Family Protein; Cholesterol Oxidase Chod; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Gmc Oxidoreductase Family Protein; GMC Oxidoreductase Family; Ferredoxin Domain Gmc Oxidoreductase; Cholesterol Oxidase ChoD; GMC Family Oxidoreductase

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAKTSWDLRKFLWAPKLGCYGIQRIHLLRNVMILAGA
GVGGGSLNYANTLYVPPEPFFANQQWAHITDWHSELAPHYDQAQRMLGVVCNPTFTDADRILKEVVDEMGFGDTFVPTPV
GVFFGPDGTQTPGRTVADPYFGGVGPVRTGCLECGCCMTGCRHGAKNTLVKNYLGLAESAGAQVIPMTTVKGFELRSEGL
WEVHTVRTGSWLRRGRRTFTAAHLLLAAGTWGTQRLLFRMRDQGKLPRLSQRLGVLTRTNSESIVGAGTLNVMPDRDLTH
GVAITSSIHPTSDTHIEPIRYGKGSNAMGLLQTLMTDGPGPEGTDVPRWRQLLHQASEDPRRMLRLINPRRWSERTVIAL
VMQHLDNSITTFTKRGKLGIRWYSSKQGNGEPNPSWIPIGNEVTRRLAAKIDGVAGGTWGELFNIPLTAHFLGGAVIGDN
AEHGVIDPYHRVYGYPTLYVVDGAAISANLGVNPSLSIAAQAERAASLWPNKGQHDQRPRQGESYRRLAPIAPDHPVVPA
EAPGALRWL

Sequences:

>Translated_569_residues
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAKTSWDLRKFLWAPKLGCYGIQRIHLLRNVMILAGA
GVGGGSLNYANTLYVPPEPFFANQQWAHITDWHSELAPHYDQAQRMLGVVCNPTFTDADRILKEVVDEMGFGDTFVPTPV
GVFFGPDGTQTPGRTVADPYFGGVGPVRTGCLECGCCMTGCRHGAKNTLVKNYLGLAESAGAQVIPMTTVKGFELRSEGL
WEVHTVRTGSWLRRGRRTFTAAHLLLAAGTWGTQRLLFRMRDQGKLPRLSQRLGVLTRTNSESIVGAGTLNVMPDRDLTH
GVAITSSIHPTSDTHIEPIRYGKGSNAMGLLQTLMTDGPGPEGTDVPRWRQLLHQASEDPRRMLRLINPRRWSERTVIAL
VMQHLDNSITTFTKRGKLGIRWYSSKQGNGEPNPSWIPIGNEVTRRLAAKIDGVAGGTWGELFNIPLTAHFLGGAVIGDN
AEHGVIDPYHRVYGYPTLYVVDGAAISANLGVNPSLSIAAQAERAASLWPNKGQHDQRPRQGESYRRLAPIAPDHPVVPA
EAPGALRWL
>Mature_569_residues
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAKTSWDLRKFLWAPKLGCYGIQRIHLLRNVMILAGA
GVGGGSLNYANTLYVPPEPFFANQQWAHITDWHSELAPHYDQAQRMLGVVCNPTFTDADRILKEVVDEMGFGDTFVPTPV
GVFFGPDGTQTPGRTVADPYFGGVGPVRTGCLECGCCMTGCRHGAKNTLVKNYLGLAESAGAQVIPMTTVKGFELRSEGL
WEVHTVRTGSWLRRGRRTFTAAHLLLAAGTWGTQRLLFRMRDQGKLPRLSQRLGVLTRTNSESIVGAGTLNVMPDRDLTH
GVAITSSIHPTSDTHIEPIRYGKGSNAMGLLQTLMTDGPGPEGTDVPRWRQLLHQASEDPRRMLRLINPRRWSERTVIAL
VMQHLDNSITTFTKRGKLGIRWYSSKQGNGEPNPSWIPIGNEVTRRLAAKIDGVAGGTWGELFNIPLTAHFLGGAVIGDN
AEHGVIDPYHRVYGYPTLYVVDGAAISANLGVNPSLSIAAQAERAASLWPNKGQHDQRPRQGESYRRLAPIAPDHPVVPA
EAPGALRWL

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62295; Mature: 62295

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAKTSWDLRKFLWAPKL
CCCCCCEEEEECCCCCCEEEEEEECCCCEEEHHHHCCHHCCHHHHHHHHHHHHHHHCCCC
GCYGIQRIHLLRNVMILAGAGVGGGSLNYANTLYVPPEPFFANQQWAHITDWHSELAPHY
CHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCH
DQAQRMLGVVCNPTFTDADRILKEVVDEMGFGDTFVPTPVGVFFGPDGTQTPGRTVADPY
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
FGGVGPVRTGCLECGCCMTGCRHGAKNTLVKNYLGLAESAGAQVIPMTTVKGFELRSEGL
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCC
WEVHTVRTGSWLRRGRRTFTAAHLLLAAGTWGTQRLLFRMRDQGKLPRLSQRLGVLTRTN
EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCEEEECC
SESIVGAGTLNVMPDRDLTHGVAITSSIHPTSDTHIEPIRYGKGSNAMGLLQTLMTDGPG
CCCEEECCEEECCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCC
PEGTDVPRWRQLLHQASEDPRRMLRLINPRRWSERTVIALVMQHLDNSITTFTKRGKLGI
CCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCEEE
RWYSSKQGNGEPNPSWIPIGNEVTRRLAAKIDGVAGGTWGELFNIPLTAHFLGGAVIGDN
EEECCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHEECCEEEHHHCCEEECCC
AEHGVIDPYHRVYGYPTLYVVDGAAISANLGVNPSLSIAAQAERAASLWPNKGQHDQRPR
CCCCCCCCHHHHHCCCEEEEECCCEEEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCC
QGESYRRLAPIAPDHPVVPAEAPGALRWL
CCCCHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAKTSWDLRKFLWAPKL
CCCCCCEEEEECCCCCCEEEEEEECCCCEEEHHHHCCHHCCHHHHHHHHHHHHHHHCCCC
GCYGIQRIHLLRNVMILAGAGVGGGSLNYANTLYVPPEPFFANQQWAHITDWHSELAPHY
CHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCH
DQAQRMLGVVCNPTFTDADRILKEVVDEMGFGDTFVPTPVGVFFGPDGTQTPGRTVADPY
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
FGGVGPVRTGCLECGCCMTGCRHGAKNTLVKNYLGLAESAGAQVIPMTTVKGFELRSEGL
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCC
WEVHTVRTGSWLRRGRRTFTAAHLLLAAGTWGTQRLLFRMRDQGKLPRLSQRLGVLTRTN
EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCEEEECC
SESIVGAGTLNVMPDRDLTHGVAITSSIHPTSDTHIEPIRYGKGSNAMGLLQTLMTDGPG
CCCEEECCEEECCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCC
PEGTDVPRWRQLLHQASEDPRRMLRLINPRRWSERTVIALVMQHLDNSITTFTKRGKLGI
CCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCEEE
RWYSSKQGNGEPNPSWIPIGNEVTRRLAAKIDGVAGGTWGELFNIPLTAHFLGGAVIGDN
EEECCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHEECCEEEHHHCCEEECCC
AEHGVIDPYHRVYGYPTLYVVDGAAISANLGVNPSLSIAAQAERAASLWPNKGQHDQRPR
CCCCCCCCHHHHHCCCEEEEECCCEEEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCC
QGESYRRLAPIAPDHPVVPAEAPGALRWL
CCCCHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA