Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 220933189

GI number: 220933189

Start: 2576139

End: 2576783

Strand: Reverse

Name: jag [H]

Synonym: Hore_23570

Alternate gene names: 220933189

Gene position: 2576783-2576139 (Counterclockwise)

Preceding gene: 220933190

Following gene: 220933188

Centisome position: 99.95

GC content: 40.16

Gene sequence:

>645_bases
ATGGATGTTGTCAGGCAGGAAGGGAAAACTGTTGAAGATGCCGTTGAACAGGCCTTGCAAAAATTAAATATTACACGTGA
TGAAGCTGAGATTAAAGTTATAGATGAGGGTTCTAAAGGTATTTTTGGATTAATTGGTGGTAAAAACGCTGTTGTTGAAG
TAAAGCCAAAAGTAAATCCCGCATCTATTGCCCTGGATTTTTTAGAAGATGTCCTTGAAAAAATACCGGTGGCAACCAGG
GTTGAAGTAATAGAAGAAAAAACAGACTATGACCAGGTTTATCTTAATATAAGTGGCGATAATCTTGGAATTATAATAGG
TTATCGTGGTGAAACCCTTGATGCCCTACAATATCTTACATCCCTGGTTGTTAATAGGGAATTAAAAAAGTATACCAGGG
TATTGTTAGATGCAGAGGGATACCGGGAACGGCGTAAAAAAACCCTGGAAAGGCTTGCTAATAAACTGGCCAGAAAAGCA
ATCAGGGTCGGGCGAAAGGTTGTCCTTGAACCCATGCCGCCACATGAAAGAAGGATTATTCATATGACCTTAAAGGATAG
TGAACAGGTCTATACTTACAGTGAGGGGCAGGAACCCTATCGACGGGTTTTAATAGCTCCCAGGATGGAAAAAGACAATG
GATAA

Upstream 100 bases:

>100_bases
CCGGGGTCTTATTGTACTGGTTGACTCAGACTGTACTTACTGTAATTCAACAGTATATTATTTATCAAGACCCTGAAATG
AAGGGGGCGGTAGGAGAATA

Downstream 100 bases:

>100_bases
TAACTGAATTTGTGTTTACACTAAACCCAGTAGGTTTTCCTACTGGGTTTCATTCGTATTTTTAAGGTTTGATTCAAGGG
GGTGGCGAGATGAAAGGGTT

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MDVVRQEGKTVEDAVEQALQKLNITRDEAEIKVIDEGSKGIFGLIGGKNAVVEVKPKVNPASIALDFLEDVLEKIPVATR
VEVIEEKTDYDQVYLNISGDNLGIIIGYRGETLDALQYLTSLVVNRELKKYTRVLLDAEGYRERRKKTLERLANKLARKA
IRVGRKVVLEPMPPHERRIIHMTLKDSEQVYTYSEGQEPYRRVLIAPRMEKDNG

Sequences:

>Translated_214_residues
MDVVRQEGKTVEDAVEQALQKLNITRDEAEIKVIDEGSKGIFGLIGGKNAVVEVKPKVNPASIALDFLEDVLEKIPVATR
VEVIEEKTDYDQVYLNISGDNLGIIIGYRGETLDALQYLTSLVVNRELKKYTRVLLDAEGYRERRKKTLERLANKLARKA
IRVGRKVVLEPMPPHERRIIHMTLKDSEQVYTYSEGQEPYRRVLIAPRMEKDNG
>Mature_214_residues
MDVVRQEGKTVEDAVEQALQKLNITRDEAEIKVIDEGSKGIFGLIGGKNAVVEVKPKVNPASIALDFLEDVLEKIPVATR
VEVIEEKTDYDQVYLNISGDNLGIIIGYRGETLDALQYLTSLVVNRELKKYTRVLLDAEGYRERRKKTLERLANKLARKA
IRVGRKVVLEPMPPHERRIIHMTLKDSEQVYTYSEGQEPYRRVLIAPRMEKDNG

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 24375; Mature: 24375

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVRQEGKTVEDAVEQALQKLNITRDEAEIKVIDEGSKGIFGLIGGKNAVVEVKPKVNP
CCCCHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCH
ASIALDFLEDVLEKIPVATRVEVIEEKTDYDQVYLNISGDNLGIIIGYRGETLDALQYLT
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHH
SLVVNRELKKYTRVLLDAEGYRERRKKTLERLANKLARKAIRVGRKVVLEPMPPHERRII
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEE
HMTLKDSEQVYTYSEGQEPYRRVLIAPRMEKDNG
EEEECCCCEEEEECCCCCHHHHEEECCCCCCCCC
>Mature Secondary Structure
MDVVRQEGKTVEDAVEQALQKLNITRDEAEIKVIDEGSKGIFGLIGGKNAVVEVKPKVNP
CCCCHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCH
ASIALDFLEDVLEKIPVATRVEVIEEKTDYDQVYLNISGDNLGIIIGYRGETLDALQYLT
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHH
SLVVNRELKKYTRVLLDAEGYRERRKKTLERLANKLARKAIRVGRKVVLEPMPPHERRII
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEE
HMTLKDSEQVYTYSEGQEPYRRVLIAPRMEKDNG
EEEECCCCEEEEECCCCCHHHHEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]