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The map label for this gene is amyC [H]

Identifier: 220933152

GI number: 220933152

Start: 2536924

End: 2538888

Strand: Reverse

Name: amyC [H]

Synonym: Hore_23200

Alternate gene names: 220933152

Gene position: 2538888-2536924 (Counterclockwise)

Preceding gene: 220933153

Following gene: 220933151

Centisome position: 98.48

GC content: 44.48

Gene sequence:

>1965_bases
ATGTTAGCTAATTTACATAAAAGAAGGTTACTGGTCTTTTTGGTTATATCCTTAGTTGTCTTTACAGGATTAAACCTTTA
CACAGGGTCGGAAGCTATAGCCGGGGAAACCACAGCTTTAGACTGGGAACCGGCTGAATGGGCCCGTAAGGCAGTATTTT
ATGAAGTCTTTGTCAGGAGTTTTTATGATGGAAATGGAGATGGAATCGGGGATTTTGTGGGATTAAAGGAAAAGATACCA
TACTTTAAAGAACTGGGGGTTGATACCCTCTGGTTGATGCCGGTTAATGATTCTCAAAGTTACCACGGGTATGATGTTGT
TGATTACTATAATACAGAACCTGATTACGGAACCCTGGAAGAATTCCGGGAGTTTTTACAGGAGGCCCATGCCAATGGTC
TTAAGGTAATCATGGACCTGGTTTTAAACCACACCTCGGTCAACCACTACTGGTTCCGTGAGGCTGTAAACACCAGAGAC
AGTAAATACCGTGATTATTATGTCTGGGCTGAAAATGAGGAACAGGTTAAAGAACTGGGCCCCTGGGGCCAGCCGGTCTG
GCACAGATCCCCGGACGGGGGTTATTATTATGGCCTCTTCTGGAGTGGTATGCCTGACCTTAACTACCGCAACCCTGAGG
TCAGGGCTGAAGCTAAAAAAATAGCGAAATTCTGGCTGGACCCCAATGGAGATGGAGATTTTTCCGATGGTGTTGACGGT
TTCCGCCTCGATGCAGCCTTACATATTGATAAAGACCTTACAATAACCCATCAGTGGTGGCAGGAGTTTAATACCTTTGT
CAAGGGGATTAATCCCGAAGCCTTTCTTGTTGGAGAGAACTGGACAGACACCCATACGGTAGGAGAGTTTTTCCGGGATT
TAGATGCCTCTTTTAATTTTGCCCTGGCCGATGAAATTCTGAGAATGGTTAACGGGGTCCCGGTCGATATTCTGGAGGAG
GTAAAGGAGATACACGGAGTATATAGCCAGTATTCTGACCAGTATATTGATGCCATTTTTCTGAGAAACCATGACCAGAA
CCGGGTCGGTATTGAGGTATTGCGGAACCGGGCAAAGATGAAACTGGCGGCATCCGTTCTGTTTACTCTGCCCGGAACCC
CCTTCATCTATTATGGTGAAGAACTGGGACAGCTGGGGGCCAAGCCCGATGACAATATCAGGGAACCCTTTGACTGGTAT
AAAGATAGTAAGGGACCGGGAATGACCACTATGTCTAAAGGTGGTTTCTACCACTCCATGAGGTTTACCAAACCCCATGA
CGGAATATCCCTGGAAGAAGAACGGGGTAAAAGTGGGAGTGTTTATGAACATTATAAGAAATTAATCCACATCAGGAAGG
AACACCCTCAGTTTTTTACCGGAAACTATCAGAAGATGGTTACCCCGAACCGGATGTATGGCTATAAGGTAACCGATTCT
GAAGTAGATTATAACCTGTATGTTATCCATAATTTATCCAATAAAGAACGGGGGATAACCATTTCTAACAGAGCCCGGGA
TTTACTTTCAGGAAAAACCATTAAGGCCCATCAGGGGATTACATTACCACCCTATGGCTCCCTGATATTAAAAACAACAG
CCGCCTCTTTGAAAATAACCGGTCAGGATTTAAGCACCAAAAACCCTGTTGTAACCTTTATCGTTGAGCTAACTGATAAA
GCCAGGACAGATGAAGATATATACCTGGCTTCAAAGTTGAGTAACTGGCAGGTTGATGATAAATTCAAACTTAAGAAGAG
ATCAGATGGCAAATATGAAATCACCCTGGAACAACCGGCCGGGGCAGCCCTTATTTTTAAGTTTAAAACCCCGGGTACCT
GGGAGGATACCTCCGGTAGAGAAAATGAGGGGGATAACCGTTTCCAGGGGAGTGGCTATAATAACAGAATATATACTTTT
GAAAACAAGGAGACAGTCTACCTAACCATAACCGGTTGGGAATAA

Upstream 100 bases:

>100_bases
ATCAGGTTCTATTATAAGTGATTATTCTGGTCGTGTAAAATATAAAGTTTTATTATGAAATCTGCTTATTTAAATATTTA
ACTACATAGGGGGAGTATTA

Downstream 100 bases:

>100_bases
AATTAGTTGATAATAAAACCAGTTAAATAAAAAAGGGGGAGGAGTATGACTGGAAGGAGTATGATCGGAAGGAGTATTAC
TATAACAGGTTTTATCATAA

Product: alpha amylase

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 654; Mature: 654

Protein sequence:

>654_residues
MLANLHKRRLLVFLVISLVVFTGLNLYTGSEAIAGETTALDWEPAEWARKAVFYEVFVRSFYDGNGDGIGDFVGLKEKIP
YFKELGVDTLWLMPVNDSQSYHGYDVVDYYNTEPDYGTLEEFREFLQEAHANGLKVIMDLVLNHTSVNHYWFREAVNTRD
SKYRDYYVWAENEEQVKELGPWGQPVWHRSPDGGYYYGLFWSGMPDLNYRNPEVRAEAKKIAKFWLDPNGDGDFSDGVDG
FRLDAALHIDKDLTITHQWWQEFNTFVKGINPEAFLVGENWTDTHTVGEFFRDLDASFNFALADEILRMVNGVPVDILEE
VKEIHGVYSQYSDQYIDAIFLRNHDQNRVGIEVLRNRAKMKLAASVLFTLPGTPFIYYGEELGQLGAKPDDNIREPFDWY
KDSKGPGMTTMSKGGFYHSMRFTKPHDGISLEEERGKSGSVYEHYKKLIHIRKEHPQFFTGNYQKMVTPNRMYGYKVTDS
EVDYNLYVIHNLSNKERGITISNRARDLLSGKTIKAHQGITLPPYGSLILKTTAASLKITGQDLSTKNPVVTFIVELTDK
ARTDEDIYLASKLSNWQVDDKFKLKKRSDGKYEITLEQPAGAALIFKFKTPGTWEDTSGRENEGDNRFQGSGYNNRIYTF
ENKETVYLTITGWE

Sequences:

>Translated_654_residues
MLANLHKRRLLVFLVISLVVFTGLNLYTGSEAIAGETTALDWEPAEWARKAVFYEVFVRSFYDGNGDGIGDFVGLKEKIP
YFKELGVDTLWLMPVNDSQSYHGYDVVDYYNTEPDYGTLEEFREFLQEAHANGLKVIMDLVLNHTSVNHYWFREAVNTRD
SKYRDYYVWAENEEQVKELGPWGQPVWHRSPDGGYYYGLFWSGMPDLNYRNPEVRAEAKKIAKFWLDPNGDGDFSDGVDG
FRLDAALHIDKDLTITHQWWQEFNTFVKGINPEAFLVGENWTDTHTVGEFFRDLDASFNFALADEILRMVNGVPVDILEE
VKEIHGVYSQYSDQYIDAIFLRNHDQNRVGIEVLRNRAKMKLAASVLFTLPGTPFIYYGEELGQLGAKPDDNIREPFDWY
KDSKGPGMTTMSKGGFYHSMRFTKPHDGISLEEERGKSGSVYEHYKKLIHIRKEHPQFFTGNYQKMVTPNRMYGYKVTDS
EVDYNLYVIHNLSNKERGITISNRARDLLSGKTIKAHQGITLPPYGSLILKTTAASLKITGQDLSTKNPVVTFIVELTDK
ARTDEDIYLASKLSNWQVDDKFKLKKRSDGKYEITLEQPAGAALIFKFKTPGTWEDTSGRENEGDNRFQGSGYNNRIYTF
ENKETVYLTITGWE
>Mature_654_residues
MLANLHKRRLLVFLVISLVVFTGLNLYTGSEAIAGETTALDWEPAEWARKAVFYEVFVRSFYDGNGDGIGDFVGLKEKIP
YFKELGVDTLWLMPVNDSQSYHGYDVVDYYNTEPDYGTLEEFREFLQEAHANGLKVIMDLVLNHTSVNHYWFREAVNTRD
SKYRDYYVWAENEEQVKELGPWGQPVWHRSPDGGYYYGLFWSGMPDLNYRNPEVRAEAKKIAKFWLDPNGDGDFSDGVDG
FRLDAALHIDKDLTITHQWWQEFNTFVKGINPEAFLVGENWTDTHTVGEFFRDLDASFNFALADEILRMVNGVPVDILEE
VKEIHGVYSQYSDQYIDAIFLRNHDQNRVGIEVLRNRAKMKLAASVLFTLPGTPFIYYGEELGQLGAKPDDNIREPFDWY
KDSKGPGMTTMSKGGFYHSMRFTKPHDGISLEEERGKSGSVYEHYKKLIHIRKEHPQFFTGNYQKMVTPNRMYGYKVTDS
EVDYNLYVIHNLSNKERGITISNRARDLLSGKTIKAHQGITLPPYGSLILKTTAASLKITGQDLSTKNPVVTFIVELTDK
ARTDEDIYLASKLSNWQVDDKFKLKKRSDGKYEITLEQPAGAALIFKFKTPGTWEDTSGRENEGDNRFQGSGYNNRIYTF
ENKETVYLTITGWE

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=210, Percent_Identity=36.6666666666667, Blast_Score=137, Evalue=3e-32,
Organism=Escherichia coli, GI1790687, Length=211, Percent_Identity=40.2843601895735, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1786604, Length=355, Percent_Identity=27.0422535211268, Blast_Score=108, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI32565753, Length=381, Percent_Identity=23.8845144356955, Blast_Score=94, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321726, Length=513, Percent_Identity=28.6549707602339, Blast_Score=160, Evalue=6e-40,
Organism=Saccharomyces cerevisiae, GI6322245, Length=512, Percent_Identity=27.9296875, Blast_Score=156, Evalue=9e-39,
Organism=Saccharomyces cerevisiae, GI6324416, Length=558, Percent_Identity=27.0609318996416, Blast_Score=147, Evalue=6e-36,
Organism=Saccharomyces cerevisiae, GI6322241, Length=561, Percent_Identity=27.2727272727273, Blast_Score=146, Evalue=8e-36,
Organism=Saccharomyces cerevisiae, GI6322021, Length=561, Percent_Identity=27.2727272727273, Blast_Score=146, Evalue=8e-36,
Organism=Saccharomyces cerevisiae, GI6319776, Length=561, Percent_Identity=26.5597147950089, Blast_Score=144, Evalue=4e-35,
Organism=Saccharomyces cerevisiae, GI6321731, Length=567, Percent_Identity=25.9259259259259, Blast_Score=141, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24583745, Length=601, Percent_Identity=26.7886855241265, Blast_Score=172, Evalue=8e-43,
Organism=Drosophila melanogaster, GI221330053, Length=607, Percent_Identity=27.0181219110379, Blast_Score=167, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24586593, Length=587, Percent_Identity=25.2129471890971, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24583747, Length=562, Percent_Identity=26.1565836298932, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24583749, Length=531, Percent_Identity=26.1770244821092, Blast_Score=158, Evalue=1e-38,
Organism=Drosophila melanogaster, GI24586587, Length=560, Percent_Identity=25.5357142857143, Blast_Score=157, Evalue=3e-38,
Organism=Drosophila melanogaster, GI24586597, Length=583, Percent_Identity=24.6998284734134, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI45549022, Length=574, Percent_Identity=27.7003484320557, Blast_Score=154, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24586591, Length=584, Percent_Identity=26.027397260274, Blast_Score=153, Evalue=4e-37,
Organism=Drosophila melanogaster, GI24586599, Length=515, Percent_Identity=26.9902912621359, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24586589, Length=483, Percent_Identity=26.2939958592132, Blast_Score=142, Evalue=8e-34,
Organism=Drosophila melanogaster, GI281360393, Length=529, Percent_Identity=23.062381852552, Blast_Score=106, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006046
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 75209; Mature: 75209

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANLHKRRLLVFLVISLVVFTGLNLYTGSEAIAGETTALDWEPAEWARKAVFYEVFVRS
CCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
FYDGNGDGIGDFVGLKEKIPYFKELGVDTLWLMPVNDSQSYHGYDVVDYYNTEPDYGTLE
HCCCCCCCCHHHCCHHHHCCHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCHH
EFREFLQEAHANGLKVIMDLVLNHTSVNHYWFREAVNTRDSKYRDYYVWAENEEQVKELG
HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHCC
PWGQPVWHRSPDGGYYYGLFWSGMPDLNYRNPEVRAEAKKIAKFWLDPNGDGDFSDGVDG
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
FRLDAALHIDKDLTITHQWWQEFNTFVKGINPEAFLVGENWTDTHTVGEFFRDLDASFNF
EEEEEEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCH
ALADEILRMVNGVPVDILEEVKEIHGVYSQYSDQYIDAIFLRNHDQNRVGIEVLRNRAKM
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHH
KLAASVLFTLPGTPFIYYGEELGQLGAKPDDNIREPFDWYKDSKGPGMTTMSKGGFYHSM
HHEEEEHEECCCCCEEEECHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEECCCCEEEEE
RFTKPHDGISLEEERGKSGSVYEHYKKLIHIRKEHPQFFTGNYQKMVTPNRMYGYKVTDS
EECCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCCCEECCCCCEEEEEECCC
EVDYNLYVIHNLSNKERGITISNRARDLLSGKTIKAHQGITLPPYGSLILKTTAASLKIT
CCCEEEEEEEECCCCCCCEEEHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEECEEEEE
GQDLSTKNPVVTFIVELTDKARTDEDIYLASKLSNWQVDDKFKLKKRSDGKYEITLEQPA
CCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCC
GAALIFKFKTPGTWEDTSGRENEGDNRFQGSGYNNRIYTFENKETVYLTITGWE
CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC
>Mature Secondary Structure
MLANLHKRRLLVFLVISLVVFTGLNLYTGSEAIAGETTALDWEPAEWARKAVFYEVFVRS
CCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
FYDGNGDGIGDFVGLKEKIPYFKELGVDTLWLMPVNDSQSYHGYDVVDYYNTEPDYGTLE
HCCCCCCCCHHHCCHHHHCCHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCHH
EFREFLQEAHANGLKVIMDLVLNHTSVNHYWFREAVNTRDSKYRDYYVWAENEEQVKELG
HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHCC
PWGQPVWHRSPDGGYYYGLFWSGMPDLNYRNPEVRAEAKKIAKFWLDPNGDGDFSDGVDG
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
FRLDAALHIDKDLTITHQWWQEFNTFVKGINPEAFLVGENWTDTHTVGEFFRDLDASFNF
EEEEEEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCH
ALADEILRMVNGVPVDILEEVKEIHGVYSQYSDQYIDAIFLRNHDQNRVGIEVLRNRAKM
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHH
KLAASVLFTLPGTPFIYYGEELGQLGAKPDDNIREPFDWYKDSKGPGMTTMSKGGFYHSM
HHEEEEHEECCCCCEEEECHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEECCCCEEEEE
RFTKPHDGISLEEERGKSGSVYEHYKKLIHIRKEHPQFFTGNYQKMVTPNRMYGYKVTDS
EECCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCCCEECCCCCEEEEEECCC
EVDYNLYVIHNLSNKERGITISNRARDLLSGKTIKAHQGITLPPYGSLILKTTAASLKIT
CCCEEEEEEEECCCCCCCEEEHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEEECEEEEE
GQDLSTKNPVVTFIVELTDKARTDEDIYLASKLSNWQVDDKFKLKKRSDGKYEITLEQPA
CCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCC
GAALIFKFKTPGTWEDTSGRENEGDNRFQGSGYNNRIYTFENKETVYLTITGWE
CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2458257 [H]