Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 220933131

GI number: 220933131

Start: 2512191

End: 2513051

Strand: Reverse

Name: ycjO [C]

Synonym: Hore_22990

Alternate gene names: 220933131

Gene position: 2513051-2512191 (Counterclockwise)

Preceding gene: 220933132

Following gene: 220933130

Centisome position: 97.48

GC content: 37.75

Gene sequence:

>861_bases
ATGAAAAAATATGTTCCATATTTTCTAATAGCTCCAGCCTTTCTGGTTTTATTGTTATTAATGGTTTATCCCATAATCTG
GAATATATACTTAAGCTTTCATGATGTTACATTAATTAAATTAAACAGGGCATGGGAGCCGGTGGCCCTTAGAAATTATT
TTAATGTTATTACTGATATGTATTTCTGGGAATCAATGTGGGTAACCGGTAAGTTTGTTGTTGGTTCGGTGGTAGGTCAA
TTGGTATTTGGCTTAATACTTGCCCTCTTATTACACAAAAAGGTAAAAGGTAGCGGAATGTTCCGGGTTATTTATATTAT
TCCCTGGTTATTATCTGATGTTATAGTTGGTTTTACCTGGCAGTGGAGCTATCATGAAAAGTTCGGAATGATAAATACAT
TATTGGGAAAACTGGGGATACCAGCCATTGACTGGTTGGGTAATCCTGATATAGCCATATGGGCCATTGTTATCACTAAT
ATCTGGTTTGGGACACCTTTCACAATGCTGTTTCTGGGATCAGCTTTAAATACTATTAGCAGGGAGTTATACGAAGCGGC
CCGGGTTGATGGAGCCACCAGATGGCAACAATTCTGGTATGTAACTATACCTGCTCTAAAGCCTTTTATTGCTACCAACC
TTATTTTACTAACCATGTGGACTGTAAACCTTTTTGGCCTGCAGTATGTAATGACCGGTGGCGGTCCCTTATTCTCGACA
ACAACCCTATCATTGTTTATGTATAATAATGCTTTCGAATATGGCAAACTGTCAATCGGGTCATCGATAGGTTTTATTTT
GCTTATAATTAATGCCATTGCTGCTTATTTCTATGTTAAACTGGTACAGAGGGAGGGTTAA

Upstream 100 bases:

>100_bases
AAAGAATTTGAAATAAAGGGCAGCTATTTTGCTGCCCTTTCAAACTGGTTTATTGTAATAGATGATAATAGTTAGGAGGA
GTAATATGGGGAGTAATAAA

Downstream 100 bases:

>100_bases
TACATTGGCGAGAAAGAAGATATATATTTATATTGGGTTGATTTTGTTTGCTTTAATTGCACTGGCTCCGATATTATGGG
TTTTCACGACATCGTTAAAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKKYVPYFLIAPAFLVLLLLMVYPIIWNIYLSFHDVTLIKLNRAWEPVALRNYFNVITDMYFWESMWVTGKFVVGSVVGQ
LVFGLILALLLHKKVKGSGMFRVIYIIPWLLSDVIVGFTWQWSYHEKFGMINTLLGKLGIPAIDWLGNPDIAIWAIVITN
IWFGTPFTMLFLGSALNTISRELYEAARVDGATRWQQFWYVTIPALKPFIATNLILLTMWTVNLFGLQYVMTGGGPLFST
TTLSLFMYNNAFEYGKLSIGSSIGFILLIINAIAAYFYVKLVQREG

Sequences:

>Translated_286_residues
MKKYVPYFLIAPAFLVLLLLMVYPIIWNIYLSFHDVTLIKLNRAWEPVALRNYFNVITDMYFWESMWVTGKFVVGSVVGQ
LVFGLILALLLHKKVKGSGMFRVIYIIPWLLSDVIVGFTWQWSYHEKFGMINTLLGKLGIPAIDWLGNPDIAIWAIVITN
IWFGTPFTMLFLGSALNTISRELYEAARVDGATRWQQFWYVTIPALKPFIATNLILLTMWTVNLFGLQYVMTGGGPLFST
TTLSLFMYNNAFEYGKLSIGSSIGFILLIINAIAAYFYVKLVQREG
>Mature_286_residues
MKKYVPYFLIAPAFLVLLLLMVYPIIWNIYLSFHDVTLIKLNRAWEPVALRNYFNVITDMYFWESMWVTGKFVVGSVVGQ
LVFGLILALLLHKKVKGSGMFRVIYIIPWLLSDVIVGFTWQWSYHEKFGMINTLLGKLGIPAIDWLGNPDIAIWAIVITN
IWFGTPFTMLFLGSALNTISRELYEAARVDGATRWQQFWYVTIPALKPFIATNLILLTMWTVNLFGLQYVMTGGGPLFST
TTLSLFMYNNAFEYGKLSIGSSIGFILLIINAIAAYFYVKLVQREG

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=253, Percent_Identity=29.6442687747036, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=24.9122807017544, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790465, Length=204, Percent_Identity=29.9019607843137, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32708; Mature: 32708

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYVPYFLIAPAFLVLLLLMVYPIIWNIYLSFHDVTLIKLNRAWEPVALRNYFNVITDM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH
YFWESMWVTGKFVVGSVVGQLVFGLILALLLHKKVKGSGMFRVIYIIPWLLSDVIVGFTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCEEE
QWSYHEKFGMINTLLGKLGIPAIDWLGNPDIAIWAIVITNIWFGTPFTMLFLGSALNTIS
EECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RELYEAARVDGATRWQQFWYVTIPALKPFIATNLILLTMWTVNLFGLQYVMTGGGPLFST
HHHHHHHHCCCHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH
TTLSLFMYNNAFEYGKLSIGSSIGFILLIINAIAAYFYVKLVQREG
HHEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKYVPYFLIAPAFLVLLLLMVYPIIWNIYLSFHDVTLIKLNRAWEPVALRNYFNVITDM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH
YFWESMWVTGKFVVGSVVGQLVFGLILALLLHKKVKGSGMFRVIYIIPWLLSDVIVGFTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCEEE
QWSYHEKFGMINTLLGKLGIPAIDWLGNPDIAIWAIVITNIWFGTPFTMLFLGSALNTIS
EECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RELYEAARVDGATRWQQFWYVTIPALKPFIATNLILLTMWTVNLFGLQYVMTGGGPLFST
HHHHHHHHCCCHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH
TTLSLFMYNNAFEYGKLSIGSSIGFILLIINAIAAYFYVKLVQREG
HHEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA