Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 220933101

GI number: 220933101

Start: 2476431

End: 2477399

Strand: Reverse

Name: rbsC [H]

Synonym: Hore_22690

Alternate gene names: 220933101

Gene position: 2477399-2476431 (Counterclockwise)

Preceding gene: 220933102

Following gene: 220933100

Centisome position: 96.09

GC content: 41.49

Gene sequence:

>969_bases
GTGAACAGAGTAGCTTCTAAAAAGAGGTTAAAATTCTTAGAGGGAGAGTTTATAAAGTCCTATGGAGGAATCTTACTGGG
TTTAATAATTATATGTCTTATCTTTACAATACTTTCTCCCCGTTTTCTAAATATCAGGAATATCATGAATATCATATTAC
AGGTATCAATTATTGCTATTGCAGCCTTTGGGATGACTTTTGCCCTCATCATTGGTGGTATTGACCTGTCAGTTGGTTCA
ACCATTGCTCTGGTAGGGACAGTGGCTGCCTTCCTGTTAACTCAGGGCCTGCCTTTTTTGCTGGTGCTTTTATTAACCCT
TGCCTTTGGGGCTATTCTGGGGTTATTTAATGGAACCATGATTTCAAAGCTCCATATTCCAGCCTTTATTGTAACGGTGG
CTACCATGAGTATTTTCAGGGGGATTGCCTATCTGATAACCGGGGGTATTCCTATTGTAATTCAGGATGGTGTGTTCCTG
GCCCTGGGTAATAACTCCTTTCTGGGGATTCCGATTCCGGTTCTGGTACTGCTGGGGTTATTTATTGTCACCGGTGTGCT
CTTATCTAAAACTAAATTCGGACGCCATGCCTATATTACCGGTGGGAACGAGGAAGCGGCCAGGTTTGCCGGTATTAAAG
TTTCCAATCTGAAAATTAAAATTTATGTTATCACCAGTTTAATGGCTACCGTCAGTGGTATTCTCCTTGCTTCCAGGCTT
TATTCGGCCCAGCCCAATGCTGCCAGTGGCTATGAGCTTGATGCAATTGCTGCCTCAGTACTGGGTGGAACAAGCCTGAG
TGGTGGTTATGGAACTATCTTTGGCACTTTAATCGGGGCTATTATAATTGGTGTTATCAATAACGGGATGAACCTTGTCA
GTGTACCTTATTTTTACCAGTTAATTGTTAAAGGACTGGTTATCCTGGTTGCTGTATATATTGATGTAAGAAATAAATCA
AATAGGTAA

Upstream 100 bases:

>100_bases
GGATCGTTGTCATGAGGGATGGTCAATTTGTTAAGGAGTTTGTAACATCCCGGACCACCCAGGAAGAAATAATGTTATAT
GCGACAGGGGGTAATAGAAG

Downstream 100 bases:

>100_bases
ACAATATAAAAAAGAGAGAAACTTAAACAGGAAACTGATATTAAGAGATTCGGGAGAACACCACTAGAGGGGGGTTTACA
TGCCTGAAGTAATAACCATT

Product: Monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MNRVASKKRLKFLEGEFIKSYGGILLGLIIICLIFTILSPRFLNIRNIMNIILQVSIIAIAAFGMTFALIIGGIDLSVGS
TIALVGTVAAFLLTQGLPFLLVLLLTLAFGAILGLFNGTMISKLHIPAFIVTVATMSIFRGIAYLITGGIPIVIQDGVFL
ALGNNSFLGIPIPVLVLLGLFIVTGVLLSKTKFGRHAYITGGNEEAARFAGIKVSNLKIKIYVITSLMATVSGILLASRL
YSAQPNAASGYELDAIAASVLGGTSLSGGYGTIFGTLIGAIIIGVINNGMNLVSVPYFYQLIVKGLVILVAVYIDVRNKS
NR

Sequences:

>Translated_322_residues
MNRVASKKRLKFLEGEFIKSYGGILLGLIIICLIFTILSPRFLNIRNIMNIILQVSIIAIAAFGMTFALIIGGIDLSVGS
TIALVGTVAAFLLTQGLPFLLVLLLTLAFGAILGLFNGTMISKLHIPAFIVTVATMSIFRGIAYLITGGIPIVIQDGVFL
ALGNNSFLGIPIPVLVLLGLFIVTGVLLSKTKFGRHAYITGGNEEAARFAGIKVSNLKIKIYVITSLMATVSGILLASRL
YSAQPNAASGYELDAIAASVLGGTSLSGGYGTIFGTLIGAIIIGVINNGMNLVSVPYFYQLIVKGLVILVAVYIDVRNKS
NR
>Mature_322_residues
MNRVASKKRLKFLEGEFIKSYGGILLGLIIICLIFTILSPRFLNIRNIMNIILQVSIIAIAAFGMTFALIIGGIDLSVGS
TIALVGTVAAFLLTQGLPFLLVLLLTLAFGAILGLFNGTMISKLHIPAFIVTVATMSIFRGIAYLITGGIPIVIQDGVFL
ALGNNSFLGIPIPVLVLLGLFIVTGVLLSKTKFGRHAYITGGNEEAARFAGIKVSNLKIKIYVITSLMATVSGILLASRL
YSAQPNAASGYELDAIAASVLGGTSLSGGYGTIFGTLIGAIIIGVINNGMNLVSVPYFYQLIVKGLVILVAVYIDVRNKS
NR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=44.1471571906354, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI145693152, Length=321, Percent_Identity=40.809968847352, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1788896, Length=294, Percent_Identity=39.1156462585034, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=37.0253164556962, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1789992, Length=360, Percent_Identity=34.1666666666667, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI87082395, Length=266, Percent_Identity=40.6015037593985, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787794, Length=296, Percent_Identity=30.4054054054054, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=31.7857142857143, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788471, Length=337, Percent_Identity=35.6083086053413, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI145693214, Length=249, Percent_Identity=34.9397590361446, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34042; Mature: 34042

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVASKKRLKFLEGEFIKSYGGILLGLIIICLIFTILSPRFLNIRNIMNIILQVSIIAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AAFGMTFALIIGGIDLSVGSTIALVGTVAAFLLTQGLPFLLVLLLTLAFGAILGLFNGTM
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
ISKLHIPAFIVTVATMSIFRGIAYLITGGIPIVIQDGVFLALGNNSFLGIPIPVLVLLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCEECCCHHHHHHHHH
FIVTGVLLSKTKFGRHAYITGGNEEAARFAGIKVSNLKIKIYVITSLMATVSGILLASRL
HHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEECEEEEEEHHHHHHHHHHHHHHHHHH
YSAQPNAASGYELDAIAASVLGGTSLSGGYGTIFGTLIGAIIIGVINNGMNLVSVPYFYQ
HCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
LIVKGLVILVAVYIDVRNKSNR
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNRVASKKRLKFLEGEFIKSYGGILLGLIIICLIFTILSPRFLNIRNIMNIILQVSIIAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AAFGMTFALIIGGIDLSVGSTIALVGTVAAFLLTQGLPFLLVLLLTLAFGAILGLFNGTM
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
ISKLHIPAFIVTVATMSIFRGIAYLITGGIPIVIQDGVFLALGNNSFLGIPIPVLVLLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCEECCCHHHHHHHHH
FIVTGVLLSKTKFGRHAYITGGNEEAARFAGIKVSNLKIKIYVITSLMATVSGILLASRL
HHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEECEEEEEEHHHHHHHHHHHHHHHHHH
YSAQPNAASGYELDAIAASVLGGTSLSGGYGTIFGTLIGAIIIGVINNGMNLVSVPYFYQ
HCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
LIVKGLVILVAVYIDVRNKSNR
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]