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The map label for this gene is ykwD [H]

Identifier: 220932977

GI number: 220932977

Start: 2334276

End: 2335043

Strand: Reverse

Name: ykwD [H]

Synonym: Hore_21450

Alternate gene names: 220932977

Gene position: 2335043-2334276 (Counterclockwise)

Preceding gene: 220932978

Following gene: 220932976

Centisome position: 90.57

GC content: 36.46

Gene sequence:

>768_bases
GTGAGGTTATTAAAGTCACGGTCTTTAAATATATTATTAATATTAATTTTGACTTTAAATTTTCTTCTGGTTAATTTTAT
TGTCTCACCAAGAGTGGAGGCAGGCTTTCTGGACGAACATAAAGGGAGCCTTATAACCATTTTAAAAGGGATTGTTATGG
TCTGGCTAATAAATATAATGACAGGGTATTCTGATGGGGACAGTGGTAATGAAAATATTATCACATCTTTTATTAAAAAC
GGACTCAATCCATCTTCAGATGAAACTGAAGATGGTAACAGTGATACCAGCAAGGAAGAAGTCAATCAGAAGGCAACTGA
ACCTGGGACAGGAGATAGTAAAGTAGTTATTAACGGTTCAGAAAAGGTTCTTAATGTCAGGGAAACTAAATTATTGAGGC
TGGTAAATAACTACAGGAAGGAAAAAGGCCTTGGTTTATTAAGGGTAGACAAAAAGCTGGTGAAACTGGCCCGCTTGAAA
GCCCGTGATATGATGGAGAATGATTATTTTGAGCATAATTCTCCGGTTTACGGGAGTCCCTTCAATATGATGAAAGAGGC
CGGGGTCGATTATAGCCTGGCTGGTGAGAACCTGGCTAAATCCGATAACGTAGAAGAAGCCTTTATTAACCTTATTAATA
GTCCTGAGCATAAAGATAATATTTTAAAGGAGAGATTTGATAATACGGGAATTGGTGTCATAGAGAGTCCTTCCGGAAAA
TTAATTATTGTACAATTATTTATTGATACTACTAATCCGGCAGAATAA

Upstream 100 bases:

>100_bases
ACCCTCTAAGTTGTTTTTTTATTTTCCCATTAATTACATTAGATATTCATGACTTACTTATGTTATAATAATGGCAAAAG
TGACTTTAGGGGGTGTTCTA

Downstream 100 bases:

>100_bases
GGAGGGTTTAACCTCCTTATTTTTTTATGTTCAGGAGAATTTAGGTAAAGGTGGATTAGAGATAAGTTTACTATTTTTTT
TGTTAAATTATCACACCTCC

Product: SCP-like extracellular

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MRLLKSRSLNILLILILTLNFLLVNFIVSPRVEAGFLDEHKGSLITILKGIVMVWLINIMTGYSDGDSGNENIITSFIKN
GLNPSSDETEDGNSDTSKEEVNQKATEPGTGDSKVVINGSEKVLNVRETKLLRLVNNYRKEKGLGLLRVDKKLVKLARLK
ARDMMENDYFEHNSPVYGSPFNMMKEAGVDYSLAGENLAKSDNVEEAFINLINSPEHKDNILKERFDNTGIGVIESPSGK
LIIVQLFIDTTNPAE

Sequences:

>Translated_255_residues
MRLLKSRSLNILLILILTLNFLLVNFIVSPRVEAGFLDEHKGSLITILKGIVMVWLINIMTGYSDGDSGNENIITSFIKN
GLNPSSDETEDGNSDTSKEEVNQKATEPGTGDSKVVINGSEKVLNVRETKLLRLVNNYRKEKGLGLLRVDKKLVKLARLK
ARDMMENDYFEHNSPVYGSPFNMMKEAGVDYSLAGENLAKSDNVEEAFINLINSPEHKDNILKERFDNTGIGVIESPSGK
LIIVQLFIDTTNPAE
>Mature_255_residues
MRLLKSRSLNILLILILTLNFLLVNFIVSPRVEAGFLDEHKGSLITILKGIVMVWLINIMTGYSDGDSGNENIITSFIKN
GLNPSSDETEDGNSDTSKEEVNQKATEPGTGDSKVVINGSEKVLNVRETKLLRLVNNYRKEKGLGLLRVDKKLVKLARLK
ARDMMENDYFEHNSPVYGSPFNMMKEAGVDYSLAGENLAKSDNVEEAFINLINSPEHKDNILKERFDNTGIGVIESPSGK
LIIVQLFIDTTNPAE

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 28357; Mature: 28357

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLKSRSLNILLILILTLNFLLVNFIVSPRVEAGFLDEHKGSLITILKGIVMVWLINIM
CCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHH
TGYSDGDSGNENIITSFIKNGLNPSSDETEDGNSDTSKEEVNQKATEPGTGDSKVVINGS
HCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCC
EKVLNVRETKLLRLVNNYRKEKGLGLLRVDKKLVKLARLKARDMMENDYFEHNSPVYGSP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
FNMMKEAGVDYSLAGENLAKSDNVEEAFINLINSPEHKDNILKERFDNTGIGVIESPSGK
HHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCC
LIIVQLFIDTTNPAE
EEEEEEEEECCCCCC
>Mature Secondary Structure
MRLLKSRSLNILLILILTLNFLLVNFIVSPRVEAGFLDEHKGSLITILKGIVMVWLINIM
CCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHH
TGYSDGDSGNENIITSFIKNGLNPSSDETEDGNSDTSKEEVNQKATEPGTGDSKVVINGS
HCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCC
EKVLNVRETKLLRLVNNYRKEKGLGLLRVDKKLVKLARLKARDMMENDYFEHNSPVYGSP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
FNMMKEAGVDYSLAGENLAKSDNVEEAFINLINSPEHKDNILKERFDNTGIGVIESPSGK
HHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCC
LIIVQLFIDTTNPAE
EEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]