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The map label for this gene is ugpB [C]

Identifier: 220932895

GI number: 220932895

Start: 2231247

End: 2232491

Strand: Reverse

Name: ugpB [C]

Synonym: Hore_20630

Alternate gene names: 220932895

Gene position: 2232491-2231247 (Counterclockwise)

Preceding gene: 220932896

Following gene: 220932894

Centisome position: 86.59

GC content: 38.47

Gene sequence:

>1245_bases
ATGACAAAAAATAATTTAGTTAAAGTAATTTCGGTAATTGTTTTGATTTTATCTCTCAGTACAGTAGCTATGGCAAAGCA
GGTAGAATTAACATTCTGGAATGGATTTACGGGACCGGACAGGGTTCAGGTTGAAGGCCTGGTAAAAGAATTTAATGAAA
CACACCCTGATATAAACATAAAAATGGAAATCATGCCCTGGGATAGCTTTTTTCAGAAATTATTGCCTTCCCTGGCAGTA
GGAAAAGGACCTGATATTGCTGCTTTTGATACTTCTTATATTCCGCGGTATGCAGAGTCAGGCGTTATTGCTCCTATTGA
TGACTTATATGAAGGGTATATTGATAAAGACACCCTGATACCGGCTATGTATAATAACCTTAAATGGAAGGGTAAAACCT
ACGGATCACCAATGAATTACACAAGTTTACTTCTTTATTACAACAAGGATATGTTCAAAGAAGCCGGGCTTGATCCCAAT
AATCCTCCAAGAACCTGGAAAGAATTAAAAGAATATGCCCTGAAGCTTACAAAAGATACTAATAATGATGGTAAAGTAGA
CCAGTATGGTTTTGTAATTGCTGCAAAGCAGACTATTCCCATGTGGCCTATAGTTATCTGGGGGAATGGTGGTCGGATAA
TCAAAGATGGAGAGGTTTTTATAAATAAACCGAAAGCTGTGGAAGCGGTAGAAAGCATGGCCAGTCTTATTAAAGAAGAC
GGTATTTCGCCCATTGGGTTGACGGGGGCTGAATGTGATAAATTATTTGAAACCCAGAGGGCAGCTATGTATTTCTGTGG
TCCCTGGATGGTAAATGGTTTTAAAAATGCTGGCATAAATTTCGGTGTGGCCCAGGTACCTGCCAGGGAAGATGGCAGGA
GAATAACCCTCGGTACCAGTGTAGCCATGGTACTAAACAAAGCTAGCCTGGATAAGAAAGAAGCTGCCTATGAATTCTTT
AAATTCTGGAATTCTAAAAAGTCACAAATTTACTGGTCTCTAGGATCTGGTTTCCCCCCAACCAGGATAGATATTACAGA
AGAAAAATTGGCTCAAAATCCGTTTGTAGTTGAATTTTCTAGAGCTGCCAGAGACTCAAGGTTTTATTTGCCTAAATTAG
AGAATTTCAACAAAATTAATTCAGATGTTATTGTTCCTGCCCTTGAAAAGGTCCTATATGATAAAGCTACAGCTGAGGAA
GCCCTAGACGAAGCAGCATTTATAATTAAAAGAATTATAGATTAA

Upstream 100 bases:

>100_bases
CAGGGCCGGCCCTGAATAATGTTTTTTAGTTTAATAAAACATACAAAGGTTTAACAAAAGTTAAAGTCCGGTGGGTAAAA
AATGTTTAGGGGGTATAGTA

Downstream 100 bases:

>100_bases
ATGTAAAAACACAATTGTATGGGGTTCTATCCGGGCCCCATACATTAATTATACCCGAGATTACACAGGAGGCGGAAGAT
ATTGAATATTTTAAACAAAA

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTKNNLVKVISVIVLILSLSTVAMAKQVELTFWNGFTGPDRVQVEGLVKEFNETHPDINIKMEIMPWDSFFQKLLPSLAV
GKGPDIAAFDTSYIPRYAESGVIAPIDDLYEGYIDKDTLIPAMYNNLKWKGKTYGSPMNYTSLLLYYNKDMFKEAGLDPN
NPPRTWKELKEYALKLTKDTNNDGKVDQYGFVIAAKQTIPMWPIVIWGNGGRIIKDGEVFINKPKAVEAVESMASLIKED
GISPIGLTGAECDKLFETQRAAMYFCGPWMVNGFKNAGINFGVAQVPAREDGRRITLGTSVAMVLNKASLDKKEAAYEFF
KFWNSKKSQIYWSLGSGFPPTRIDITEEKLAQNPFVVEFSRAARDSRFYLPKLENFNKINSDVIVPALEKVLYDKATAEE
ALDEAAFIIKRIID

Sequences:

>Translated_414_residues
MTKNNLVKVISVIVLILSLSTVAMAKQVELTFWNGFTGPDRVQVEGLVKEFNETHPDINIKMEIMPWDSFFQKLLPSLAV
GKGPDIAAFDTSYIPRYAESGVIAPIDDLYEGYIDKDTLIPAMYNNLKWKGKTYGSPMNYTSLLLYYNKDMFKEAGLDPN
NPPRTWKELKEYALKLTKDTNNDGKVDQYGFVIAAKQTIPMWPIVIWGNGGRIIKDGEVFINKPKAVEAVESMASLIKED
GISPIGLTGAECDKLFETQRAAMYFCGPWMVNGFKNAGINFGVAQVPAREDGRRITLGTSVAMVLNKASLDKKEAAYEFF
KFWNSKKSQIYWSLGSGFPPTRIDITEEKLAQNPFVVEFSRAARDSRFYLPKLENFNKINSDVIVPALEKVLYDKATAEE
ALDEAAFIIKRIID
>Mature_413_residues
TKNNLVKVISVIVLILSLSTVAMAKQVELTFWNGFTGPDRVQVEGLVKEFNETHPDINIKMEIMPWDSFFQKLLPSLAVG
KGPDIAAFDTSYIPRYAESGVIAPIDDLYEGYIDKDTLIPAMYNNLKWKGKTYGSPMNYTSLLLYYNKDMFKEAGLDPNN
PPRTWKELKEYALKLTKDTNNDGKVDQYGFVIAAKQTIPMWPIVIWGNGGRIIKDGEVFINKPKAVEAVESMASLIKEDG
ISPIGLTGAECDKLFETQRAAMYFCGPWMVNGFKNAGINFGVAQVPAREDGRRITLGTSVAMVLNKASLDKKEAAYEFFK
FWNSKKSQIYWSLGSGFPPTRIDITEEKLAQNPFVVEFSRAARDSRFYLPKLENFNKINSDVIVPALEKVLYDKATAEEA
LDEAAFIIKRIID

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=409, Percent_Identity=24.6943765281174, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790466, Length=331, Percent_Identity=24.4712990936556, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46562; Mature: 46431

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS01333 PYRASE_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNNLVKVISVIVLILSLSTVAMAKQVELTFWNGFTGPDRVQVEGLVKEFNETHPDINI
CCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE
KMEIMPWDSFFQKLLPSLAVGKGPDIAAFDTSYIPRYAESGVIAPIDDLYEGYIDKDTLI
EEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCHHHHHHCCCCCCHHH
PAMYNNLKWKGKTYGSPMNYTSLLLYYNKDMFKEAGLDPNNPPRTWKELKEYALKLTKDT
HHHHCCCEECCCCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
NNDGKVDQYGFVIAAKQTIPMWPIVIWGNGGRIIKDGEVFINKPKAVEAVESMASLIKED
CCCCCEECCEEEEEECCCCCCEEEEEECCCCEEEECCCEEEECCHHHHHHHHHHHHHHHC
GISPIGLTGAECDKLFETQRAAMYFCGPWMVNGFKNAGINFGVAQVPAREDGRRITLGTS
CCCCCCCCHHHHHHHHHHHHHHEEEECHHHHCCCCCCCCCCCEEECCCCCCCCEEEECCH
VAMVLNKASLDKKEAAYEFFKFWNSKKSQIYWSLGSGFPPTRIDITEEKLAQNPFVVEFS
HHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHCCCCEEEEEH
RAARDSRFYLPKLENFNKINSDVIVPALEKVLYDKATAEEALDEAAFIIKRIID
HHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKNNLVKVISVIVLILSLSTVAMAKQVELTFWNGFTGPDRVQVEGLVKEFNETHPDINI
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE
KMEIMPWDSFFQKLLPSLAVGKGPDIAAFDTSYIPRYAESGVIAPIDDLYEGYIDKDTLI
EEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCHHHHHHCCCCCCHHH
PAMYNNLKWKGKTYGSPMNYTSLLLYYNKDMFKEAGLDPNNPPRTWKELKEYALKLTKDT
HHHHCCCEECCCCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
NNDGKVDQYGFVIAAKQTIPMWPIVIWGNGGRIIKDGEVFINKPKAVEAVESMASLIKED
CCCCCEECCEEEEEECCCCCCEEEEEECCCCEEEECCCEEEECCHHHHHHHHHHHHHHHC
GISPIGLTGAECDKLFETQRAAMYFCGPWMVNGFKNAGINFGVAQVPAREDGRRITLGTS
CCCCCCCCHHHHHHHHHHHHHHEEEECHHHHCCCCCCCCCCCEEECCCCCCCCEEEECCH
VAMVLNKASLDKKEAAYEFFKFWNSKKSQIYWSLGSGFPPTRIDITEEKLAQNPFVVEFS
HHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHCCCCEEEEEH
RAARDSRFYLPKLENFNKINSDVIVPALEKVLYDKATAEEALDEAAFIIKRIID
HHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA