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The map label for this gene is araQ [H]

Identifier: 220932893

GI number: 220932893

Start: 2229432

End: 2230253

Strand: Reverse

Name: araQ [H]

Synonym: Hore_20610

Alternate gene names: 220932893

Gene position: 2230253-2229432 (Counterclockwise)

Preceding gene: 220932894

Following gene: 220932892

Centisome position: 86.51

GC content: 36.74

Gene sequence:

>822_bases
ATGACCAGAACAATTAATAAAATCCTTATATATTTCATTTTACTGTTTTTTTTAGTTATTACTTTATACCCTTTTATATG
GATGGTGTTAACTTCATTTAAAATAGAATCCGATATAGTGTCTTATCCTCCAACCCTGATTCCCAGGACATTTACTTTAA
AATCTTACTTAAACATCTGGAAGAGCATCCCTTTTGTAAGGTTTTTTATCAACACTGTAATTTTCGCAGTGGGGGTTACA
GTAATATCTGTATTTTTTGATTCTATGGCTGCATATGCTTTTGCCCGTATTAATTTTCCGGGAAAAAAGTTTTTATTTAT
ACTGGTGTTGGCAACTCTAATGGTGCCTTTTCAGGTAACTTTAATACCTGTTTTTAAAATATTATTTAACCTGGGCTGGC
TGGATACGTTTCTGGCGTTGATAATTCCAAGAGCCAGCAATGCCTTCGGTATATTTTTGCTTCGACAGTTCTTTATTACT
ATTCCCGGGGAACTGGAAGATGCTGCCAGGATAGACGGGTGTTCCGAATTCAGGATTTACTGGAACATCATATTACCCCT
GTCAAAACCGGCATTAACAACACTGGCAATCTTCCATTTTATGTATAACTGGAATGATTTCTTATGGCCACTGGTTATGA
CAAGTAGTTCTACCATGAGGACCCTTCCGGTAGGACTGGCATTATTCATGGGGGAACATGTAATTGAATATGGATTATTA
ATGGCCGGGGCTACTCTGGCGTTATTACCTATTGTTGTTGCTTATCTGTTTGCCCAACGATTTTTTATAAAAGGTATAGC
TTTAACAGGACTTAAGGGGTAG

Upstream 100 bases:

>100_bases
AGCAACCATTGCCTATACTCTATTTATAATAATAATTATAGTAACTATTTTCCAGCTTAAATACTTTAAAATGGATCTAG
ACAACTAGGGGTGGATGAAA

Downstream 100 bases:

>100_bases
CTAACCCAGTGTGAATAATTTAATATTACAATTATTATATTAAAACTGGAGGAAGTTATATGAGCCAAGACATTCTAAGA
CAAAGCAAGAAAGCATCAGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTRTINKILIYFILLFFLVITLYPFIWMVLTSFKIESDIVSYPPTLIPRTFTLKSYLNIWKSIPFVRFFINTVIFAVGVT
VISVFFDSMAAYAFARINFPGKKFLFILVLATLMVPFQVTLIPVFKILFNLGWLDTFLALIIPRASNAFGIFLLRQFFIT
IPGELEDAARIDGCSEFRIYWNIILPLSKPALTTLAIFHFMYNWNDFLWPLVMTSSSTMRTLPVGLALFMGEHVIEYGLL
MAGATLALLPIVVAYLFAQRFFIKGIALTGLKG

Sequences:

>Translated_273_residues
MTRTINKILIYFILLFFLVITLYPFIWMVLTSFKIESDIVSYPPTLIPRTFTLKSYLNIWKSIPFVRFFINTVIFAVGVT
VISVFFDSMAAYAFARINFPGKKFLFILVLATLMVPFQVTLIPVFKILFNLGWLDTFLALIIPRASNAFGIFLLRQFFIT
IPGELEDAARIDGCSEFRIYWNIILPLSKPALTTLAIFHFMYNWNDFLWPLVMTSSSTMRTLPVGLALFMGEHVIEYGLL
MAGATLALLPIVVAYLFAQRFFIKGIALTGLKG
>Mature_272_residues
TRTINKILIYFILLFFLVITLYPFIWMVLTSFKIESDIVSYPPTLIPRTFTLKSYLNIWKSIPFVRFFINTVIFAVGVTV
ISVFFDSMAAYAFARINFPGKKFLFILVLATLMVPFQVTLIPVFKILFNLGWLDTFLALIIPRASNAFGIFLLRQFFITI
PGELEDAARIDGCSEFRIYWNIILPLSKPALTTLAIFHFMYNWNDFLWPLVMTSSSTMRTLPVGLALFMGEHVIEYGLLM
AGATLALLPIVVAYLFAQRFFIKGIALTGLKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=276, Percent_Identity=36.9565217391304, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI1789860, Length=264, Percent_Identity=32.9545454545455, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1790464, Length=218, Percent_Identity=28.8990825688073, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31185; Mature: 31054

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTINKILIYFILLFFLVITLYPFIWMVLTSFKIESDIVSYPPTLIPRTFTLKSYLNIW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KSIPFVRFFINTVIFAVGVTVISVFFDSMAAYAFARINFPGKKFLFILVLATLMVPFQVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LIPVFKILFNLGWLDTFLALIIPRASNAFGIFLLRQFFITIPGELEDAARIDGCSEFRIY
HHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHEEE
WNIILPLSKPALTTLAIFHFMYNWNDFLWPLVMTSSSTMRTLPVGLALFMGEHVIEYGLL
EEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
MAGATLALLPIVVAYLFAQRFFIKGIALTGLKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TRTINKILIYFILLFFLVITLYPFIWMVLTSFKIESDIVSYPPTLIPRTFTLKSYLNIW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KSIPFVRFFINTVIFAVGVTVISVFFDSMAAYAFARINFPGKKFLFILVLATLMVPFQVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LIPVFKILFNLGWLDTFLALIIPRASNAFGIFLLRQFFITIPGELEDAARIDGCSEFRIY
HHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHEEE
WNIILPLSKPALTTLAIFHFMYNWNDFLWPLVMTSSSTMRTLPVGLALFMGEHVIEYGLL
EEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
MAGATLALLPIVVAYLFAQRFFIKGIALTGLKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]