Click here to switch to the map view.

The map label for this gene is ycjP [H]

Identifier: 220932812

GI number: 220932812

Start: 2129803

End: 2130564

Strand: Reverse

Name: ycjP [H]

Synonym: Hore_19780

Alternate gene names: 220932812

Gene position: 2130564-2129803 (Counterclockwise)

Preceding gene: 220932813

Following gene: 220932811

Centisome position: 82.64

GC content: 38.85

Gene sequence:

>762_bases
ATGATCAGTGGTTCTTTTAAAACACCGATAGAAATACAGGCAATGGAACCCACCTGGATACCCAGTACATTCACCCTTGA
TAACTACCGGGATATGAACAGAACAGTACCAATCCTGAAATTTTTTAAGAACAGTCTGATTATCAGTCTTGGGACTATGA
TTGTAACAGTTGTAATTGGCACACTGGCAGCTTACTCAATATCAAGATTCAGATTCAGGGGTAGAAATGCATATCAATTG
TCACTGTTTTCAACACAGATGTTACCAGGTATTTTGTTTTTGATACCCTATTTCGTCATGTTTACCTGGATAAAAAACAC
TCTGGGCATACCGATGACCAATACATACCACGGGATGATATTTACTTATACTTCATTTTCATTACCATTTTCCATTATTA
TGCTAAGAAACTATCTTGATTCGGTACCCCGGGAGATTGATGAACAGGCAATGATAGATGGTTGTTCCAGAGTAAAGGCA
CTATTTAAAGTGATACTCCCCCTTGCCAAACCCGGGATTGCAGCAGTTGGTATTTACTCTTTTATTATGGCCTGGAATGA
AATACTGTTTGCTATGGTCTTAACCAGAACAGAGACCCGTACTATTTCCATAGGTTTGCTGCAATATATTACTTCAAACC
AGGCCCACTGGGGCCAGATGATGGCAGCATGTATTATGACAACCATTCCTGTAATAGTACTCTTTACATTAATGCAAAAA
CATATTGTTCAGGGACTGGTATCAGGTGCTACAAAAGGATAA

Upstream 100 bases:

>100_bases
TTAAGTGAAAAAAAGAAGATATGTATATTATTTACAGAAAACACTATTTTATTTGGCTATTTTATTCATTGTGGTAATTG
TTATGGGGCCTTATCTGTGG

Downstream 100 bases:

>100_bases
AAAGGAGGTGGTGTACAGTGAAATTATTAGTTTACAGGGTTTAAGTAAGGAGAAGAGGTTTATCGGATGAAGGTTGGTCC
AGGTATTTAAAAGTAATGAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MISGSFKTPIEIQAMEPTWIPSTFTLDNYRDMNRTVPILKFFKNSLIISLGTMIVTVVIGTLAAYSISRFRFRGRNAYQL
SLFSTQMLPGILFLIPYFVMFTWIKNTLGIPMTNTYHGMIFTYTSFSLPFSIIMLRNYLDSVPREIDEQAMIDGCSRVKA
LFKVILPLAKPGIAAVGIYSFIMAWNEILFAMVLTRTETRTISIGLLQYITSNQAHWGQMMAACIMTTIPVIVLFTLMQK
HIVQGLVSGATKG

Sequences:

>Translated_253_residues
MISGSFKTPIEIQAMEPTWIPSTFTLDNYRDMNRTVPILKFFKNSLIISLGTMIVTVVIGTLAAYSISRFRFRGRNAYQL
SLFSTQMLPGILFLIPYFVMFTWIKNTLGIPMTNTYHGMIFTYTSFSLPFSIIMLRNYLDSVPREIDEQAMIDGCSRVKA
LFKVILPLAKPGIAAVGIYSFIMAWNEILFAMVLTRTETRTISIGLLQYITSNQAHWGQMMAACIMTTIPVIVLFTLMQK
HIVQGLVSGATKG
>Mature_253_residues
MISGSFKTPIEIQAMEPTWIPSTFTLDNYRDMNRTVPILKFFKNSLIISLGTMIVTVVIGTLAAYSISRFRFRGRNAYQL
SLFSTQMLPGILFLIPYFVMFTWIKNTLGIPMTNTYHGMIFTYTSFSLPFSIIMLRNYLDSVPREIDEQAMIDGCSRVKA
LFKVILPLAKPGIAAVGIYSFIMAWNEILFAMVLTRTETRTISIGLLQYITSNQAHWGQMMAACIMTTIPVIVLFTLMQK
HIVQGLVSGATKG

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=256, Percent_Identity=36.328125, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI1790464, Length=218, Percent_Identity=30.2752293577982, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789860, Length=241, Percent_Identity=26.1410788381743, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787368, Length=172, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28546; Mature: 28546

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISGSFKTPIEIQAMEPTWIPSTFTLDNYRDMNRTVPILKFFKNSLIISLGTMIVTVVIG
CCCCCCCCCEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAAYSISRFRFRGRNAYQLSLFSTQMLPGILFLIPYFVMFTWIKNTLGIPMTNTYHGMI
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
FTYTSFSLPFSIIMLRNYLDSVPREIDEQAMIDGCSRVKALFKVILPLAKPGIAAVGIYS
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FIMAWNEILFAMVLTRTETRTISIGLLQYITSNQAHWGQMMAACIMTTIPVIVLFTLMQK
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HIVQGLVSGATKG
HHHHHHHHCCCCC
>Mature Secondary Structure
MISGSFKTPIEIQAMEPTWIPSTFTLDNYRDMNRTVPILKFFKNSLIISLGTMIVTVVIG
CCCCCCCCCEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAAYSISRFRFRGRNAYQLSLFSTQMLPGILFLIPYFVMFTWIKNTLGIPMTNTYHGMI
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
FTYTSFSLPFSIIMLRNYLDSVPREIDEQAMIDGCSRVKALFKVILPLAKPGIAAVGIYS
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FIMAWNEILFAMVLTRTETRTISIGLLQYITSNQAHWGQMMAACIMTTIPVIVLFTLMQK
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HIVQGLVSGATKG
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]