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The map label for this gene is xylA [H]

Identifier: 220932787

GI number: 220932787

Start: 2094086

End: 2095405

Strand: Reverse

Name: xylA [H]

Synonym: Hore_19530

Alternate gene names: 220932787

Gene position: 2095405-2094086 (Counterclockwise)

Preceding gene: 220932788

Following gene: 220932786

Centisome position: 81.28

GC content: 42.5

Gene sequence:

>1320_bases
ATGGAAGTATTTAAAAATGTACCACAAACAATAAAATATGAAGGAAAAGATTCTGATAACCCTCTTGCCTTTAAGTACTA
CAATCCTGAAGAAAAAGTTGGCGGCAAAACAATGGAGGAACATTTGAGGTTTTCAGTGGCTTACTGGCACACCCTGACCG
GGGATGGATCCGACCCCTTCGGAATGGGAACCATGTTAAGACCATGGGATACTGCAACTGATCCTATGGAGCTTGCTAAA
GCCAGGGTCAGGGCTGCCTTTGAATTTATGAGCAAACTGGGTGTCAAATACTTCTGTTTCCATGACAGGGATATTGCTCC
GGAAGGAAGAACACTGGCTGAGACCAATAAAAACCTTGATGAAATTGTTTCTTTAATAAAAGAATTAATGGATGAAACCG
GTATTAAGCTTCTCTGGGGTACAGCCAATCTATTCTCAAACCCCAGGTTTGTTCATGGAGCGGCTACTTCCCCCAACGCT
GATGTTTTTGCCTATGCCGCTGCCCAGGTTAAAAAAGCCATGGAGATTACCAAAGAACTCGGTGGTGAAAACTATGTCTT
CTGGGGTGGTCGTGAGGGTTATGAAACCCTGTTAAATACCGATATGGAACTCGAGCAGGAAAACTTCGCCCGGTTCCTGC
ACATGGCTGTTGACTATGCCAGAGAGATTGGATTTGAAGGGCAGTTTTTAATCGAACCCAAACCAAAAGAGCCAACCAAG
CACCAGTATGACTTTGATGCTGCAACTGTTATTAGTTTTTTGAAAAAGTATGACCTTGATAAACATTTTAAACTAAACAT
AGAAGCAAACCATGCTACTCTGGCTGGCCATACTTTCCAGCATGAACTCCATGTTTCAAGAATAAATGGAATGCTGGGTA
GTGTAGATGCCAACCAGGGTGACCTGTTACTGGGCTGGGATACCGACCAGTTCCCGACCAATATTTATGAAACCACCCTT
GCCATGTATGAAATACTGAAAAATGGTGGTCTTGAACCCGGAGGGTTAAACTTTGATGCTAAAGTAAGGAGGGCGTCTTT
CGAACCTGTTGATCTCTTCTATGCTCACATTGCCGGAATGGATGCCTTTGCCCGTGGTTTAAAGGTTGCCCATAAACTCC
TTGAAAGTGGAGAACTGGAAGACTTTATCTCAGAACGTTATAAGAGTTATCGTAATGGTATTGGAGAGAAGATTGTTAAG
GGTGAAGTTGGTTTTAAAGAACTTGAAGATTATGCCCTGAATAATGGTAAGATTACCAATGTTTCTGGACGCCAGGAATT
GCTGGAATCTATTGTTAACAAATATATCATCGAAGCTTAG

Upstream 100 bases:

>100_bases
ACCAGGCTTAAAGATCTGGCCTGTTTGTACGGGCTGGCCAGTTATGTTTTTAATAAAAGTATAGATTTTGAAACTAAAAA
AAATTAGGGAGGCGACTTAA

Downstream 100 bases:

>100_bases
TTTTTTATCACAATAGTAAAGTGCCTGATTTTATATCACAGAAGTACTCAGTTTTGTATTTTTGTGAATTAACCACTATT
CTACCTTTAATATGCTGTAA

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MEVFKNVPQTIKYEGKDSDNPLAFKYYNPEEKVGGKTMEEHLRFSVAYWHTLTGDGSDPFGMGTMLRPWDTATDPMELAK
ARVRAAFEFMSKLGVKYFCFHDRDIAPEGRTLAETNKNLDEIVSLIKELMDETGIKLLWGTANLFSNPRFVHGAATSPNA
DVFAYAAAQVKKAMEITKELGGENYVFWGGREGYETLLNTDMELEQENFARFLHMAVDYAREIGFEGQFLIEPKPKEPTK
HQYDFDAATVISFLKKYDLDKHFKLNIEANHATLAGHTFQHELHVSRINGMLGSVDANQGDLLLGWDTDQFPTNIYETTL
AMYEILKNGGLEPGGLNFDAKVRRASFEPVDLFYAHIAGMDAFARGLKVAHKLLESGELEDFISERYKSYRNGIGEKIVK
GEVGFKELEDYALNNGKITNVSGRQELLESIVNKYIIEA

Sequences:

>Translated_439_residues
MEVFKNVPQTIKYEGKDSDNPLAFKYYNPEEKVGGKTMEEHLRFSVAYWHTLTGDGSDPFGMGTMLRPWDTATDPMELAK
ARVRAAFEFMSKLGVKYFCFHDRDIAPEGRTLAETNKNLDEIVSLIKELMDETGIKLLWGTANLFSNPRFVHGAATSPNA
DVFAYAAAQVKKAMEITKELGGENYVFWGGREGYETLLNTDMELEQENFARFLHMAVDYAREIGFEGQFLIEPKPKEPTK
HQYDFDAATVISFLKKYDLDKHFKLNIEANHATLAGHTFQHELHVSRINGMLGSVDANQGDLLLGWDTDQFPTNIYETTL
AMYEILKNGGLEPGGLNFDAKVRRASFEPVDLFYAHIAGMDAFARGLKVAHKLLESGELEDFISERYKSYRNGIGEKIVK
GEVGFKELEDYALNNGKITNVSGRQELLESIVNKYIIEA
>Mature_439_residues
MEVFKNVPQTIKYEGKDSDNPLAFKYYNPEEKVGGKTMEEHLRFSVAYWHTLTGDGSDPFGMGTMLRPWDTATDPMELAK
ARVRAAFEFMSKLGVKYFCFHDRDIAPEGRTLAETNKNLDEIVSLIKELMDETGIKLLWGTANLFSNPRFVHGAATSPNA
DVFAYAAAQVKKAMEITKELGGENYVFWGGREGYETLLNTDMELEQENFARFLHMAVDYAREIGFEGQFLIEPKPKEPTK
HQYDFDAATVISFLKKYDLDKHFKLNIEANHATLAGHTFQHELHVSRINGMLGSVDANQGDLLLGWDTDQFPTNIYETTL
AMYEILKNGGLEPGGLNFDAKVRRASFEPVDLFYAHIAGMDAFARGLKVAHKLLESGELEDFISERYKSYRNGIGEKIVK
GEVGFKELEDYALNNGKITNVSGRQELLESIVNKYIIEA

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=439, Percent_Identity=53.5307517084282, Blast_Score=504, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49616; Mature: 49616

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVFKNVPQTIKYEGKDSDNPLAFKYYNPEEKVGGKTMEEHLRFSVAYWHTLTGDGSDPF
CCHHHCCCHHEEECCCCCCCCEEEEEECCHHHHCCCHHHHHHHEEEEEEEEECCCCCCCC
GMGTMLRPWDTATDPMELAKARVRAAFEFMSKLGVKYFCFHDRDIAPEGRTLAETNKNLD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCHH
EIVSLIKELMDETGIKLLWGTANLFSNPRFVHGAATSPNADVFAYAAAQVKKAMEITKEL
HHHHHHHHHHHHCCCEEEEECHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
GGENYVFWGGREGYETLLNTDMELEQENFARFLHMAVDYAREIGFEGQFLIEPKPKEPTK
CCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
HQYDFDAATVISFLKKYDLDKHFKLNIEANHATLAGHTFQHELHVSRINGMLGSVDANQG
CCCCCCHHHHHHHHHHCCCCCCEEEEEEECCEEECCCHHHHHHHHHHHCCCCCCCCCCCC
DLLLGWDTDQFPTNIYETTLAMYEILKNGGLEPGGLNFDAKVRRASFEPVDLFYAHIAGM
CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
DAFARGLKVAHKLLESGELEDFISERYKSYRNGIGEKIVKGEVGFKELEDYALNNGKITN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHCCCCEEEC
VSGRQELLESIVNKYIIEA
CCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEVFKNVPQTIKYEGKDSDNPLAFKYYNPEEKVGGKTMEEHLRFSVAYWHTLTGDGSDPF
CCHHHCCCHHEEECCCCCCCCEEEEEECCHHHHCCCHHHHHHHEEEEEEEEECCCCCCCC
GMGTMLRPWDTATDPMELAKARVRAAFEFMSKLGVKYFCFHDRDIAPEGRTLAETNKNLD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCHH
EIVSLIKELMDETGIKLLWGTANLFSNPRFVHGAATSPNADVFAYAAAQVKKAMEITKEL
HHHHHHHHHHHHCCCEEEEECHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
GGENYVFWGGREGYETLLNTDMELEQENFARFLHMAVDYAREIGFEGQFLIEPKPKEPTK
CCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
HQYDFDAATVISFLKKYDLDKHFKLNIEANHATLAGHTFQHELHVSRINGMLGSVDANQG
CCCCCCHHHHHHHHHHCCCCCCEEEEEEECCEEECCCHHHHHHHHHHHCCCCCCCCCCCC
DLLLGWDTDQFPTNIYETTLAMYEILKNGGLEPGGLNFDAKVRRASFEPVDLFYAHIAGM
CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
DAFARGLKVAHKLLESGELEDFISERYKSYRNGIGEKIVKGEVGFKELEDYALNNGKITN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHCCCCEEEC
VSGRQELLESIVNKYIIEA
CCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1368665; 9495747 [H]