Click here to switch to the map view.

The map label for this gene is xylH [H]

Identifier: 220932782

GI number: 220932782

Start: 2087389

End: 2088540

Strand: Reverse

Name: xylH [H]

Synonym: Hore_19480

Alternate gene names: 220932782

Gene position: 2088540-2087389 (Counterclockwise)

Preceding gene: 220932783

Following gene: 220932781

Centisome position: 81.01

GC content: 40.02

Gene sequence:

>1152_bases
ATGGAGTCCAGGAAATTTAAATTAAATATTAATATCAAGACTTACATGATGGTAATTGCCGTCGTACTTATCTGGGTAAT
ATTTACAGCAATTACCGGTGGATCCTTCTTAACACCGAGGAACCTATCCAACCTTTTTAGACAGTCGGTATTTACCTCAA
TACTGGCCATCGGAATGGTTATGGTCATAATTCTGGGACAGATAGACCTGTCAGTTGGGTCTATTGTTGGTTTAACCGGT
GGTATTATAGCTATCTTTGATGTCTGGATGGGACTTAATCCCGTAATTTCAATACTGGTCACCCTGGTTATTGGTGTACT
ACTGGGTCTGTGGAATGGTTACTGGGTGGCTTATAAGAAAGTACCTTCATTTATAGTAACCCTGGGTGGTATGTTGATCT
TCAGGGGAATTCTTATCGGTATAACACAGGGGACAACCATTGGCCCGATGGGGGATTTATACTACTATATCGGTAAAGAG
TACCTAAGTAAATCGCTTGGTATAATCCTGAGTGTCCTGGTAATAGCCTATATTATTTATTATCAGTATAAAACAAGGCG
TAATAAATTACAGTATAACTTTGAAGTCCTGCCCATGAAACTGGAAATAGTTAAAAGTATAGCTGTGGTTTTGGCCGTAA
TTATATTTGTATTTGTAATGAATAGTTATCAGGGTATTCCTGTTCCGTTATTATTACTCCTGGTATTACTTTTCCTTTTT
TCCTTTGTTACCAGAAACACTGTATTCGGCCGTTATATTTATGCTATTGGTGGTAATAACGAAGCTGCCAGTTTATCAGG
GATAAACATCAAAAAAATTACCCTTATTGTATTTATGCTTAATGGCTTACTGGCTGCAATAGGCGGTATTTTATTAACTT
CCCGTTTGAATGCTGCCTCAGTTGCTGCCGGTACCAACGCTGAACTTGATGCTATTGCTGCCTGTGTTATCGGGGGAGCC
AGTTTGATGGGTGGTATCGGTAGTGTCGGTGGAGCAGTTATCGGTGCCATTGTTATGGCCAGTCTCGATAATGGGATGAG
TCTGATGAATGTCCCCATGTTCTGGCAGTCTATAGTGAAGGGGTTAGTGTTAATTATGGCAGTCTGGTTTGATATTGCCT
CCAAAAACAAGGGGAAAGCTGCCGAAGTATAA

Upstream 100 bases:

>100_bases
TTAGTAATTCATGAAGGTGAAGTAACTGGAGAATTCGATAATAGTTCCAGGGATGTAACCCAGGAAGAAATCATGGTATG
TGCTACAGGGGGGGAATAAA

Downstream 100 bases:

>100_bases
TTTGAAGTATAATTTACCGTGTAAGTTAGACATCTATCCTGTTTTTATAATTCCAATTGTGAATTAAAATTCAGGCTGCA
AAAACAATATTTCTAAGAGC

Product: Monosaccharide-transporting ATPase

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MESRKFKLNINIKTYMMVIAVVLIWVIFTAITGGSFLTPRNLSNLFRQSVFTSILAIGMVMVIILGQIDLSVGSIVGLTG
GIIAIFDVWMGLNPVISILVTLVIGVLLGLWNGYWVAYKKVPSFIVTLGGMLIFRGILIGITQGTTIGPMGDLYYYIGKE
YLSKSLGIILSVLVIAYIIYYQYKTRRNKLQYNFEVLPMKLEIVKSIAVVLAVIIFVFVMNSYQGIPVPLLLLLVLLFLF
SFVTRNTVFGRYIYAIGGNNEAASLSGINIKKITLIVFMLNGLLAAIGGILLTSRLNAASVAAGTNAELDAIAACVIGGA
SLMGGIGSVGGAVIGAIVMASLDNGMSLMNVPMFWQSIVKGLVLIMAVWFDIASKNKGKAAEV

Sequences:

>Translated_383_residues
MESRKFKLNINIKTYMMVIAVVLIWVIFTAITGGSFLTPRNLSNLFRQSVFTSILAIGMVMVIILGQIDLSVGSIVGLTG
GIIAIFDVWMGLNPVISILVTLVIGVLLGLWNGYWVAYKKVPSFIVTLGGMLIFRGILIGITQGTTIGPMGDLYYYIGKE
YLSKSLGIILSVLVIAYIIYYQYKTRRNKLQYNFEVLPMKLEIVKSIAVVLAVIIFVFVMNSYQGIPVPLLLLLVLLFLF
SFVTRNTVFGRYIYAIGGNNEAASLSGINIKKITLIVFMLNGLLAAIGGILLTSRLNAASVAAGTNAELDAIAACVIGGA
SLMGGIGSVGGAVIGAIVMASLDNGMSLMNVPMFWQSIVKGLVLIMAVWFDIASKNKGKAAEV
>Mature_383_residues
MESRKFKLNINIKTYMMVIAVVLIWVIFTAITGGSFLTPRNLSNLFRQSVFTSILAIGMVMVIILGQIDLSVGSIVGLTG
GIIAIFDVWMGLNPVISILVTLVIGVLLGLWNGYWVAYKKVPSFIVTLGGMLIFRGILIGITQGTTIGPMGDLYYYIGKE
YLSKSLGIILSVLVIAYIIYYQYKTRRNKLQYNFEVLPMKLEIVKSIAVVLAVIIFVFVMNSYQGIPVPLLLLLVLLFLF
SFVTRNTVFGRYIYAIGGNNEAASLSGINIKKITLIVFMLNGLLAAIGGILLTSRLNAASVAAGTNAELDAIAACVIGGA
SLMGGIGSVGGAVIGAIVMASLDNGMSLMNVPMFWQSIVKGLVLIMAVWFDIASKNKGKAAEV

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=370, Percent_Identity=52.7027027027027, Blast_Score=342, Evalue=2e-95,
Organism=Escherichia coli, GI1788896, Length=161, Percent_Identity=40.3726708074534, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790191, Length=147, Percent_Identity=46.2585034013605, Blast_Score=131, Evalue=9e-32,
Organism=Escherichia coli, GI145693152, Length=155, Percent_Identity=41.9354838709677, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1790524, Length=154, Percent_Identity=38.961038961039, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787793, Length=140, Percent_Identity=37.8571428571429, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788471, Length=127, Percent_Identity=44.0944881889764, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082395, Length=105, Percent_Identity=41.9047619047619, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787794, Length=158, Percent_Identity=30.379746835443, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI145693214, Length=128, Percent_Identity=39.0625, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 41264; Mature: 41264

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRKFKLNINIKTYMMVIAVVLIWVIFTAITGGSFLTPRNLSNLFRQSVFTSILAIGMV
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MVIILGQIDLSVGSIVGLTGGIIAIFDVWMGLNPVISILVTLVIGVLLGLWNGYWVAYKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VPSFIVTLGGMLIFRGILIGITQGTTIGPMGDLYYYIGKEYLSKSLGIILSVLVIAYIIY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQYKTRRNKLQYNFEVLPMKLEIVKSIAVVLAVIIFVFVMNSYQGIPVPLLLLLVLLFLF
HHHHHHCCCEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SFVTRNTVFGRYIYAIGGNNEAASLSGINIKKITLIVFMLNGLLAAIGGILLTSRLNAAS
HHHHHCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VAAGTNAELDAIAACVIGGASLMGGIGSVGGAVIGAIVMASLDNGMSLMNVPMFWQSIVK
HCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GLVLIMAVWFDIASKNKGKAAEV
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MESRKFKLNINIKTYMMVIAVVLIWVIFTAITGGSFLTPRNLSNLFRQSVFTSILAIGMV
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MVIILGQIDLSVGSIVGLTGGIIAIFDVWMGLNPVISILVTLVIGVLLGLWNGYWVAYKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VPSFIVTLGGMLIFRGILIGITQGTTIGPMGDLYYYIGKEYLSKSLGIILSVLVIAYIIY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQYKTRRNKLQYNFEVLPMKLEIVKSIAVVLAVIIFVFVMNSYQGIPVPLLLLLVLLFLF
HHHHHHCCCEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SFVTRNTVFGRYIYAIGGNNEAASLSGINIKKITLIVFMLNGLLAAIGGILLTSRLNAAS
HHHHHCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VAAGTNAELDAIAACVIGGASLMGGIGSVGGAVIGAIVMASLDNGMSLMNVPMFWQSIVK
HCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GLVLIMAVWFDIASKNKGKAAEV
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]