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The map label for this gene is yvrC [H]

Identifier: 220932734

GI number: 220932734

Start: 2028712

End: 2029668

Strand: Reverse

Name: yvrC [H]

Synonym: Hore_18990

Alternate gene names: 220932734

Gene position: 2029668-2028712 (Counterclockwise)

Preceding gene: 220932735

Following gene: 220932733

Centisome position: 78.73

GC content: 39.81

Gene sequence:

>957_bases
ATGACAAAGAAAAGTATTATTAAAAAAGTGGTTGTAGTTGTTATGGTGGTGATTTTTGCAGGTTTTTCAGGAGTATTTGC
AGCAGGGGAAGATAGAGCTGACGGTTTTACGGTTACAGTTGTAGATGATCTTAATAGAGAAATTCGTCTTGAAAAAAAGC
CAGAGAGGATTATTTCCCTGTCTCCCAACATTACTGAAATTCTATTTGCCCTGGGACTTGATGAAGAAATAGTAGGGGTG
ACAACTTATGCTGATTACCCTGAAGCAGCCCTGGAAAAGGAAAAGATAGGAACCATAGTTGAGCCCAATATTGAAAAGAT
TATTTCTTTAAAACCTGACCTGGTCTTTGCAGCCGGGATTAATAAACTGGAAACGGTCTTTACCCTTAAAAAACTGGGAA
TTAAAGTTGCAGGGTTTAATCCGACCAGGGTTAATGATATTTTTGTTACCATTAAAAAGATTGGAAAACTGACGGGAAAG
AGTAAAGAGGCCCGGGCGATGGTAACTTCGATGTATATTGAGATGGCAGAGATTCAGGAACTGGTTGATGCTGCTCTAAA
AGATAGACCCCGACCCCGGGTTTTTTATGAAATCTGGAGTGATCCCCTTTACACGGCAGGAAAAAATACCTTTATTGATG
ATGTCATAAATCTGGCAGGTGGGGTTAATATTGGAGCCAAAGCCCCGGGTAAGTGGCCCCAGTTTAACCTGGAACAGTTA
TTAATTGAAAACCCTGATGTCTATATTTCAAGCCTTCACAGTGCTCCAGGTAAGGTTACGGTTGAAAAGATTAAGAAAAG
GACGGGATATAGTTCGTTGAAGGCTGTAAAGAATAACCGTGTTTATATTGTTGACCAGAATTTAGTAAGCCGGCCCTCAC
CACGGATAATAAAGGGGTTAAAGGAATTTGTAAAGGCTCTCTTTCCTGAACTGAGGGATAAAATTAATGATATGTAA

Upstream 100 bases:

>100_bases
CTGGCCGTTCCCGAGGCCAGGGTTTTTTGTTGCCTGAAAACCCATCCTTAAATTTATTTATATCCTGGACTAAAAAACTA
TAATAACAGGAGGTTTTTAA

Downstream 100 bases:

>100_bases
GTTAACTTTCTGGGTAAAGTTAACTATCTACCGCCCCCCGGGGGCGGTTTTCGTTTAAATAGAGGTTTTTACTGTAAAAT
AAAGAATGTAATAATTAAAT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTKKSIIKKVVVVVMVVIFAGFSGVFAAGEDRADGFTVTVVDDLNREIRLEKKPERIISLSPNITEILFALGLDEEIVGV
TTYADYPEAALEKEKIGTIVEPNIEKIISLKPDLVFAAGINKLETVFTLKKLGIKVAGFNPTRVNDIFVTIKKIGKLTGK
SKEARAMVTSMYIEMAEIQELVDAALKDRPRPRVFYEIWSDPLYTAGKNTFIDDVINLAGGVNIGAKAPGKWPQFNLEQL
LIENPDVYISSLHSAPGKVTVEKIKKRTGYSSLKAVKNNRVYIVDQNLVSRPSPRIIKGLKEFVKALFPELRDKINDM

Sequences:

>Translated_318_residues
MTKKSIIKKVVVVVMVVIFAGFSGVFAAGEDRADGFTVTVVDDLNREIRLEKKPERIISLSPNITEILFALGLDEEIVGV
TTYADYPEAALEKEKIGTIVEPNIEKIISLKPDLVFAAGINKLETVFTLKKLGIKVAGFNPTRVNDIFVTIKKIGKLTGK
SKEARAMVTSMYIEMAEIQELVDAALKDRPRPRVFYEIWSDPLYTAGKNTFIDDVINLAGGVNIGAKAPGKWPQFNLEQL
LIENPDVYISSLHSAPGKVTVEKIKKRTGYSSLKAVKNNRVYIVDQNLVSRPSPRIIKGLKEFVKALFPELRDKINDM
>Mature_317_residues
TKKSIIKKVVVVVMVVIFAGFSGVFAAGEDRADGFTVTVVDDLNREIRLEKKPERIISLSPNITEILFALGLDEEIVGVT
TYADYPEAALEKEKIGTIVEPNIEKIISLKPDLVFAAGINKLETVFTLKKLGIKVAGFNPTRVNDIFVTIKKIGKLTGKS
KEARAMVTSMYIEMAEIQELVDAALKDRPRPRVFYEIWSDPLYTAGKNTFIDDVINLAGGVNIGAKAPGKWPQFNLEQLL
IENPDVYISSLHSAPGKVTVEKIKKRTGYSSLKAVKNNRVYIVDQNLVSRPSPRIIKGLKEFVKALFPELRDKINDM

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=253, Percent_Identity=32.4110671936759, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 35338; Mature: 35207

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKSIIKKVVVVVMVVIFAGFSGVFAAGEDRADGFTVTVVDDLNREIRLEKKPERIISL
CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEECCCCCEECCCCCCCEEEC
SPNITEILFALGLDEEIVGVTTYADYPEAALEKEKIGTIVEPNIEKIISLKPDLVFAAGI
CCCHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHCCCCCEEEECCC
NKLETVFTLKKLGIKVAGFNPTRVNDIFVTIKKIGKLTGKSKEARAMVTSMYIEMAEIQE
HHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LVDAALKDRPRPRVFYEIWSDPLYTAGKNTFIDDVINLAGGVNIGAKAPGKWPQFNLEQL
HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LIENPDVYISSLHSAPGKVTVEKIKKRTGYSSLKAVKNNRVYIVDQNLVSRPSPRIIKGL
HHCCCCHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCEEEEEECHHHCCCCHHHHHHH
KEFVKALFPELRDKINDM
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKKSIIKKVVVVVMVVIFAGFSGVFAAGEDRADGFTVTVVDDLNREIRLEKKPERIISL
CHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEECCCCCEECCCCCCCEEEC
SPNITEILFALGLDEEIVGVTTYADYPEAALEKEKIGTIVEPNIEKIISLKPDLVFAAGI
CCCHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHCCCCCEEEECCC
NKLETVFTLKKLGIKVAGFNPTRVNDIFVTIKKIGKLTGKSKEARAMVTSMYIEMAEIQE
HHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LVDAALKDRPRPRVFYEIWSDPLYTAGKNTFIDDVINLAGGVNIGAKAPGKWPQFNLEQL
HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LIENPDVYISSLHSAPGKVTVEKIKKRTGYSSLKAVKNNRVYIVDQNLVSRPSPRIIKGL
HHCCCCHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCEEEEEECHHHCCCCHHHHHHH
KEFVKALFPELRDKINDM
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]