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The map label for this gene is opuBB [H]

Identifier: 220932679

GI number: 220932679

Start: 1968526

End: 1969170

Strand: Reverse

Name: opuBB [H]

Synonym: Hore_18430

Alternate gene names: 220932679

Gene position: 1969170-1968526 (Counterclockwise)

Preceding gene: 220932680

Following gene: 220932678

Centisome position: 76.38

GC content: 41.09

Gene sequence:

>645_bases
ATGAGTATTATTGTATACTTTATTGACCATATAGATAAAATCTATAGGTTTACTGTATCCCACCTGGCCCTTATCAGTAT
TGCTATGTTTTTTTCCTTATTACTCTGGGTGTCGGTAGGGGTTATTATCAGAAATAAAAAAAATCTGGCCCGTGGTATTC
TCGGTGTCGGTAGTTTGATTATGGCTGTCCCCAGTATTTCTCTCTATGGGATTTTAATGACTATTCCAGGGTTTGGCTTA
AGCCGGAGGAGTGCCGTTTGTGCCCTTGTTCTGTATTCAATGATTCCCATTGTTCGTAATGTATATACTGCTCTCAATGA
GGTAGATGATTCTATTTTGGAAGCGGCCCGGGGGATGGGAATGCCCCCTTTACAGGTTCTTTTTAAGATTGAACTTCCCC
TGGCTTTACCGGTTATTATAGCTGGTGTCCAGACATCTGCAGTGGTTACAGTGGGAACAGCAATTATTTCAGATTTAATA
GGGGGTGGGGGTCTGGGCCGGATGGTTTTTACCGGACTGGCCATGTTTAATCCTGTAAAGATACTAATAGGCTCACTTCT
AGCTGCTATAATTGCCATTATTTTAGATAGATTTTTTGATGTGTTGGAGAAAAAGATGTCAACTCCCCGGCTATATAGTA
AGTAG

Upstream 100 bases:

>100_bases
GTCGGAACTGTTACTTTAAAAGATATTAGGTCTTATGTCAGCAATTCCTATCAGGAAAATGATTTAGTGTCAGTTAATAT
ATAAATGGGAAGGTGGTAAT

Downstream 100 bases:

>100_bases
ATATTAACCCGGTGCAGGAGTAGCATAAAAGAGAGAATCACAATAATCAAGGAGGGATTAGAGAAAATGGTAAAAAGAAG
GTTTATTTTAGTTTTAGCTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSIIVYFIDHIDKIYRFTVSHLALISIAMFFSLLLWVSVGVIIRNKKNLARGILGVGSLIMAVPSISLYGILMTIPGFGL
SRRSAVCALVLYSMIPIVRNVYTALNEVDDSILEAARGMGMPPLQVLFKIELPLALPVIIAGVQTSAVVTVGTAIISDLI
GGGGLGRMVFTGLAMFNPVKILIGSLLAAIIAIILDRFFDVLEKKMSTPRLYSK

Sequences:

>Translated_214_residues
MSIIVYFIDHIDKIYRFTVSHLALISIAMFFSLLLWVSVGVIIRNKKNLARGILGVGSLIMAVPSISLYGILMTIPGFGL
SRRSAVCALVLYSMIPIVRNVYTALNEVDDSILEAARGMGMPPLQVLFKIELPLALPVIIAGVQTSAVVTVGTAIISDLI
GGGGLGRMVFTGLAMFNPVKILIGSLLAAIIAIILDRFFDVLEKKMSTPRLYSK
>Mature_213_residues
SIIVYFIDHIDKIYRFTVSHLALISIAMFFSLLLWVSVGVIIRNKKNLARGILGVGSLIMAVPSISLYGILMTIPGFGLS
RRSAVCALVLYSMIPIVRNVYTALNEVDDSILEAARGMGMPPLQVLFKIELPLALPVIIAGVQTSAVVTVGTAIISDLIG
GGGLGRMVFTGLAMFNPVKILIGSLLAAIIAIILDRFFDVLEKKMSTPRLYSK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=201, Percent_Identity=33.8308457711443, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1788451, Length=226, Percent_Identity=31.4159292035398, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789033, Length=128, Percent_Identity=33.59375, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23125; Mature: 22993

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIVYFIDHIDKIYRFTVSHLALISIAMFFSLLLWVSVGVIIRNKKNLARGILGVGSLI
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MAVPSISLYGILMTIPGFGLSRRSAVCALVLYSMIPIVRNVYTALNEVDDSILEAARGMG
HHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MPPLQVLFKIELPLALPVIIAGVQTSAVVTVGTAIISDLIGGGGLGRMVFTGLAMFNPVK
CCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ILIGSLLAAIIAIILDRFFDVLEKKMSTPRLYSK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SIIVYFIDHIDKIYRFTVSHLALISIAMFFSLLLWVSVGVIIRNKKNLARGILGVGSLI
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MAVPSISLYGILMTIPGFGLSRRSAVCALVLYSMIPIVRNVYTALNEVDDSILEAARGMG
HHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MPPLQVLFKIELPLALPVIIAGVQTSAVVTVGTAIISDLIGGGGLGRMVFTGLAMFNPVK
CCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ILIGSLLAAIIAIILDRFFDVLEKKMSTPRLYSK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]