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The map label for this gene is comF [H]

Identifier: 220932484

GI number: 220932484

Start: 1772401

End: 1773132

Strand: Reverse

Name: comF [H]

Synonym: Hore_16480

Alternate gene names: 220932484

Gene position: 1773132-1772401 (Counterclockwise)

Preceding gene: 220932485

Following gene: 220932483

Centisome position: 68.78

GC content: 39.48

Gene sequence:

>732_bases
GTGAATATAATTGAATTTTTTCTTGATATAATTTATCCGCCAGAAAATCATTGTCTTGTCTGTGGAAGGAAGTTAACAAT
ATTTTCCGAATTAACAGGTCTCTGTCAGGAATGTCTCAGCAATATTCATTTTATAACTGAAAGTTGTTCGCGATGTGGTC
GGGAAGTAGAGGATAAAAGGAATATCTGCAGTTATTGCAAAACATTTGAACCTGCTTACGACTTTATACATAGTGGTGCT
TCATATGATGGAATTACCAGGCAAATGTTGCTGGAATTTAAGTTTAAACAGAGAAAAGAGTTAAAGAAACCACTGGTTGA
ACTACTGTCTTTTACCTTCAGGGAGTACTTTAAAGACTATGGTATTGATTATATAGTTCCAGTTCCAATGCATTATTTAA
GAAAACGTTTGCGGGGATTTAACCAGGCCAGTCTTATGGCAGAAGGCCTGGCCAGGAAGGTAAATATACAGTGTCTACCC
GGGGCCTTACAGAGGGTTAAAGAGGGAGCACCTCTTTTTCAACATGGACTTAAAGAACGCCGGAACATAATTTCCGGTAG
TTTTGCCCCCGGGGAGGAGAGCCCACTTATTGAAGGGGCTAATATAATGATTGTTGATGATATATATACAAGTGGAACCA
CTGTAAATGAGGTTAGTACTGTTTTGCGGGAAAGGTGCCGGGTTAATAAAATATACGTCCTGACAGTAGCCAGGGCCAGG
TTTAAAGGGTAG

Upstream 100 bases:

>100_bases
AAGTTAATCTTAAAACGGTTGATAATGCCCTGCAACGGGCCCGGAAAAAGATAGAACGGATTAAACGTAATTATAATATT
AATGATTTGGTTGGTTAACC

Downstream 100 bases:

>100_bases
TAAAATCCACAATTATATATTGCAAACTTCTTGTCCATATGATATAATTTAACTAATGGGTTTCAAAATAAACTTCTTGG
ACCCATTTAAAGAAATTACA

Product: amidophosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNIIEFFLDIIYPPENHCLVCGRKLTIFSELTGLCQECLSNIHFITESCSRCGREVEDKRNICSYCKTFEPAYDFIHSGA
SYDGITRQMLLEFKFKQRKELKKPLVELLSFTFREYFKDYGIDYIVPVPMHYLRKRLRGFNQASLMAEGLARKVNIQCLP
GALQRVKEGAPLFQHGLKERRNIISGSFAPGEESPLIEGANIMIVDDIYTSGTTVNEVSTVLRERCRVNKIYVLTVARAR
FKG

Sequences:

>Translated_243_residues
MNIIEFFLDIIYPPENHCLVCGRKLTIFSELTGLCQECLSNIHFITESCSRCGREVEDKRNICSYCKTFEPAYDFIHSGA
SYDGITRQMLLEFKFKQRKELKKPLVELLSFTFREYFKDYGIDYIVPVPMHYLRKRLRGFNQASLMAEGLARKVNIQCLP
GALQRVKEGAPLFQHGLKERRNIISGSFAPGEESPLIEGANIMIVDDIYTSGTTVNEVSTVLRERCRVNKIYVLTVARAR
FKG
>Mature_243_residues
MNIIEFFLDIIYPPENHCLVCGRKLTIFSELTGLCQECLSNIHFITESCSRCGREVEDKRNICSYCKTFEPAYDFIHSGA
SYDGITRQMLLEFKFKQRKELKKPLVELLSFTFREYFKDYGIDYIVPVPMHYLRKRLRGFNQASLMAEGLARKVNIQCLP
GALQRVKEGAPLFQHGLKERRNIISGSFAPGEESPLIEGANIMIVDDIYTSGTTVNEVSTVLRERCRVNKIYVLTVARAR
FKG

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=208, Percent_Identity=27.8846153846154, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27913; Mature: 27913

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIEFFLDIIYPPENHCLVCGRKLTIFSELTGLCQECLSNIHFITESCSRCGREVEDKR
CCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
NICSYCKTFEPAYDFIHSGASYDGITRQMLLEFKFKQRKELKKPLVELLSFTFREYFKDY
HHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIDYIVPVPMHYLRKRLRGFNQASLMAEGLARKVNIQCLPGALQRVKEGAPLFQHGLKER
CCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEECHHHHHHHHCCCHHHHHHHHHH
RNIISGSFAPGEESPLIEGANIMIVDDIYTSGTTVNEVSTVLRERCRVNKIYVLTVARAR
HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHH
FKG
CCC
>Mature Secondary Structure
MNIIEFFLDIIYPPENHCLVCGRKLTIFSELTGLCQECLSNIHFITESCSRCGREVEDKR
CCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
NICSYCKTFEPAYDFIHSGASYDGITRQMLLEFKFKQRKELKKPLVELLSFTFREYFKDY
HHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIDYIVPVPMHYLRKRLRGFNQASLMAEGLARKVNIQCLPGALQRVKEGAPLFQHGLKER
CCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEECHHHHHHHHCCCHHHHHHHHHH
RNIISGSFAPGEESPLIEGANIMIVDDIYTSGTTVNEVSTVLRERCRVNKIYVLTVARAR
HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHH
FKG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]