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The map label for this gene is cspC [H]

Identifier: 220932483

GI number: 220932483

Start: 1772081

End: 1772284

Strand: Reverse

Name: cspC [H]

Synonym: Hore_16470

Alternate gene names: 220932483

Gene position: 1772284-1772081 (Counterclockwise)

Preceding gene: 220932484

Following gene: 220932482

Centisome position: 68.74

GC content: 36.27

Gene sequence:

>204_bases
ATGATTTATTCTGGTAAGGTAAAATGGTTCGATCCTAAAAAAGGTTATGGATTTATTGAAAGAGATGAAGGAGACGACGT
ATTCGTACACTTCTCTGCTATTAAGGAAGAAGGATTCAAAACGTTAGAAGAAGGTCAAGAGGTAGAATTTGAAATCGTTG
AAAGTGAACGTGGCCCACAGGCTGCTAATGTAGTTAAATTGTAA

Upstream 100 bases:

>100_bases
ATATTGCAAACTTCTTGTCCATATGATATAATTTAACTAATGGGTTTCAAAATAAACTTCTTGGACCCATTTAAAGAAAT
TACAGGGGGAATGTTTAAAG

Downstream 100 bases:

>100_bases
GACCCGTTTTATTGTACTTACAGGTTAAACAGAAATTTAAACCCTGGCTACTGTTGTAGTCAGGGTTTTTTAATAATAAT
TAGAGTAGAGCTTCAGTCAA

Product: putative cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MIYSGKVKWFDPKKGYGFIERDEGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESERGPQAANVVKL

Sequences:

>Translated_67_residues
MIYSGKVKWFDPKKGYGFIERDEGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESERGPQAANVVKL
>Mature_67_residues
MIYSGKVKWFDPKKGYGFIERDEGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESERGPQAANVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=48.4848484848485, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=48.4848484848485, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=48.4848484848485, Blast_Score=62, Evalue=1e-10,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=62.5, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=58.4615384615385, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=59.375, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=55.3846153846154, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=58.4615384615385, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=53.968253968254, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=40.625, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7685; Mature: 7685

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSGKVKWFDPKKGYGFIERDEGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESERGPQ
CCCCCCEEEECCCCCCCEEEECCCCEEEEEEEHHCCCCCHHCCCCCCEEEEEEECCCCCC
AANVVKL
CCCEECC
>Mature Secondary Structure
MIYSGKVKWFDPKKGYGFIERDEGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESERGPQ
CCCCCCEEEECCCCCCCEEEECCCCEEEEEEEHHCCCCCHHCCCCCCEEEEEEECCCCCC
AANVVKL
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]