Click here to switch to the map view.

The map label for this gene is skfB [H]

Identifier: 220932446

GI number: 220932446

Start: 1725626

End: 1727014

Strand: Reverse

Name: skfB [H]

Synonym: Hore_16100

Alternate gene names: 220932446

Gene position: 1727014-1725626 (Counterclockwise)

Preceding gene: 220932447

Following gene: 220932445

Centisome position: 66.99

GC content: 38.73

Gene sequence:

>1389_bases
ATGGCTATTAATTTTAATTTTGCCAAAAAATTTGCAGCAGAACAGATTATTAAAAGGGCCTTGAATTACATAGAAAAAGA
CCCTGACAGGAATTTTATAAAAGTCCTGGATTTACTCGAAAAGATTGCCAGAACAGAGAACCATAAAGAGGAAATTGCAA
GTTTAAGGAGAGAGTATAAGAAAAATCCAGCAATAAAACAATATATCAAAAAATTTACCGAAATTGCACCCAGTTATAAA
GAAGGTCTGGTTATGAACTTCTTTATTAATTCAGGTTTATTAGGTATACCCTATCAATTTAAAATGGCTGAGAAGCTGGG
TGTTGACGTACCATGGACTATTTTGATTGATCCAACCAGTGCCTGTAACTTGAATTGTACAGGCTGTTGGGCCGGTAAGT
ATAGCAAATCTGACAGGCTTGAATTTGAGGTTATTGACCGTATTATAACAGAAGCTAAAGAACTAGGGATTTATTTTATA
GTATTATCAGGTGGTGAACCGACCTTATATCCGCGTCTCTTTGATATCTTTGAAAAACATCAAGATGTGGGCTTTTTAAT
GTATACCAATGGAACCCTGATTGATGAAGAAATGGCTGACCGCATGGTAGAAGTCGGTAATGTCTCTCCGGCTATCAGTA
TTGAAGGTTTTAAAGAAGAAATCGATGGGCGTCGGGGAGAGGGTGTATTTGATAAAATAATGCATACCATGGATCTGCTC
CGGGATAGAGGGGTTGTGTTCGGCGCCAGTGTAACTGTTACCAGGAATAATGTCGATGAATTATTCGGTAAGGATGATTT
TATTGAACTATTGATTGAAAAAGGAGCAACTTATGTATGGTCTTTCCATTATGTACCCATTGGAAAAGATCCTAACCTGG
ATCTTATGTTAACCCCTGAACAGAGGAAGTTTATGGCTTACAAGATTCCTGAAATCAGGAGTCAAAAACCAATCTTTGTG
GCTGATTTCTGGAATGATGGAACCTTTACCGGGGGTTGTATTGCTGGAGGCAGGCGTTATTTCCATATTAATGCTAAAGG
TGAAGTAGAACCCTGTGCTTTTGTTCATTTTTCAGTTGATAATATTAAGGAAAAAAGCCTTAAAGAAGTTCTCCAGAATC
CCCTGTTTAAATCTTACCAGAAGAGGCAACCCTTTAATGAAAACCTGATGTTACCCTGTCCTATTATCGATAACCCTCAT
TGCCTCAGGGAGATTGTAGAGGAATCAGGGGCTAAACCTACTCATGAAGGTGCGGATACCGTCCTCAAAGGGGATGTTGC
TAAAGGATTAGATAAGATGTCTTCAGAGTGGAGCAGGGTTTCTAAGCCTATCTTTGAAGAGAGAATGGGGAAACCTGCCA
GTGATGATTCTGAATCCAAATTAGCCTAG

Upstream 100 bases:

>100_bases
CTTCTGTTAGTCATGGGTTTGTCAATTTTTAAGGAGGTGAGTTTAAAAAATATAACGAGATGCTTCTATAGATTTATCAA
ATAAAAGGGGGGAAAAGAAA

Downstream 100 bases:

>100_bases
TATTGATACTTCTATAAAAAATTCTGGTAACGGTATGGTAGTTTAAAGGTTATAAAATTCCCGGTGATTTTAATATCCCG
GGAATTTTATAATTTAAAGG

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MAINFNFAKKFAAEQIIKRALNYIEKDPDRNFIKVLDLLEKIARTENHKEEIASLRREYKKNPAIKQYIKKFTEIAPSYK
EGLVMNFFINSGLLGIPYQFKMAEKLGVDVPWTILIDPTSACNLNCTGCWAGKYSKSDRLEFEVIDRIITEAKELGIYFI
VLSGGEPTLYPRLFDIFEKHQDVGFLMYTNGTLIDEEMADRMVEVGNVSPAISIEGFKEEIDGRRGEGVFDKIMHTMDLL
RDRGVVFGASVTVTRNNVDELFGKDDFIELLIEKGATYVWSFHYVPIGKDPNLDLMLTPEQRKFMAYKIPEIRSQKPIFV
ADFWNDGTFTGGCIAGGRRYFHINAKGEVEPCAFVHFSVDNIKEKSLKEVLQNPLFKSYQKRQPFNENLMLPCPIIDNPH
CLREIVEESGAKPTHEGADTVLKGDVAKGLDKMSSEWSRVSKPIFEERMGKPASDDSESKLA

Sequences:

>Translated_462_residues
MAINFNFAKKFAAEQIIKRALNYIEKDPDRNFIKVLDLLEKIARTENHKEEIASLRREYKKNPAIKQYIKKFTEIAPSYK
EGLVMNFFINSGLLGIPYQFKMAEKLGVDVPWTILIDPTSACNLNCTGCWAGKYSKSDRLEFEVIDRIITEAKELGIYFI
VLSGGEPTLYPRLFDIFEKHQDVGFLMYTNGTLIDEEMADRMVEVGNVSPAISIEGFKEEIDGRRGEGVFDKIMHTMDLL
RDRGVVFGASVTVTRNNVDELFGKDDFIELLIEKGATYVWSFHYVPIGKDPNLDLMLTPEQRKFMAYKIPEIRSQKPIFV
ADFWNDGTFTGGCIAGGRRYFHINAKGEVEPCAFVHFSVDNIKEKSLKEVLQNPLFKSYQKRQPFNENLMLPCPIIDNPH
CLREIVEESGAKPTHEGADTVLKGDVAKGLDKMSSEWSRVSKPIFEERMGKPASDDSESKLA
>Mature_461_residues
AINFNFAKKFAAEQIIKRALNYIEKDPDRNFIKVLDLLEKIARTENHKEEIASLRREYKKNPAIKQYIKKFTEIAPSYKE
GLVMNFFINSGLLGIPYQFKMAEKLGVDVPWTILIDPTSACNLNCTGCWAGKYSKSDRLEFEVIDRIITEAKELGIYFIV
LSGGEPTLYPRLFDIFEKHQDVGFLMYTNGTLIDEEMADRMVEVGNVSPAISIEGFKEEIDGRRGEGVFDKIMHTMDLLR
DRGVVFGASVTVTRNNVDELFGKDDFIELLIEKGATYVWSFHYVPIGKDPNLDLMLTPEQRKFMAYKIPEIRSQKPIFVA
DFWNDGTFTGGCIAGGRRYFHINAKGEVEPCAFVHFSVDNIKEKSLKEVLQNPLFKSYQKRQPFNENLMLPCPIIDNPHC
LREIVEESGAKPTHEGADTVLKGDVAKGLDKMSSEWSRVSKPIFEERMGKPASDDSESKLA

Specific function: Required for production of the bacteriocin skfA [H]

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the moaA/nifB/pqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 52623; Mature: 52492

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINFNFAKKFAAEQIIKRALNYIEKDPDRNFIKVLDLLEKIARTENHKEEIASLRREYK
CEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
KNPAIKQYIKKFTEIAPSYKEGLVMNFFINSGLLGIPYQFKMAEKLGVDVPWTILIDPTS
CCHHHHHHHHHHHHHCCCHHCCEEEEEEECCCEECCCHHHHHHHHCCCCCCEEEEECCCC
ACNLNCTGCWAGKYSKSDRLEFEVIDRIITEAKELGIYFIVLSGGEPTLYPRLFDIFEKH
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHC
QDVGFLMYTNGTLIDEEMADRMVEVGNVSPAISIEGFKEEIDGRRGEGVFDKIMHTMDLL
CCCEEEEEECCCEECHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCHHHHHHHHHHHH
RDRGVVFGASVTVTRNNVDELFGKDDFIELLIEKGATYVWSFHYVPIGKDPNLDLMLTPE
HHCCEEEEEEEEEECCCHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEECCC
QRKFMAYKIPEIRSQKPIFVADFWNDGTFTGGCIAGGRRYFHINAKGEVEPCAFVHFSVD
HHCEEEEECCCCCCCCCEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCEEEEEEEHH
NIKEKSLKEVLQNPLFKSYQKRQPFNENLMLPCPIIDNPHCLREIVEESGAKPTHEGADT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH
VLKGDVAKGLDKMSSEWSRVSKPIFEERMGKPASDDSESKLA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AINFNFAKKFAAEQIIKRALNYIEKDPDRNFIKVLDLLEKIARTENHKEEIASLRREYK
EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
KNPAIKQYIKKFTEIAPSYKEGLVMNFFINSGLLGIPYQFKMAEKLGVDVPWTILIDPTS
CCHHHHHHHHHHHHHCCCHHCCEEEEEEECCCEECCCHHHHHHHHCCCCCCEEEEECCCC
ACNLNCTGCWAGKYSKSDRLEFEVIDRIITEAKELGIYFIVLSGGEPTLYPRLFDIFEKH
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHC
QDVGFLMYTNGTLIDEEMADRMVEVGNVSPAISIEGFKEEIDGRRGEGVFDKIMHTMDLL
CCCEEEEEECCCEECHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCHHHHHHHHHHHH
RDRGVVFGASVTVTRNNVDELFGKDDFIELLIEKGATYVWSFHYVPIGKDPNLDLMLTPE
HHCCEEEEEEEEEECCCHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEECCC
QRKFMAYKIPEIRSQKPIFVADFWNDGTFTGGCIAGGRRYFHINAKGEVEPCAFVHFSVD
HHCEEEEECCCCCCCCCEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCEEEEEEEHH
NIKEKSLKEVLQNPLFKSYQKRQPFNENLMLPCPIIDNPHCLREIVEESGAKPTHEGADT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH
VLKGDVAKGLDKMSSEWSRVSKPIFEERMGKPASDDSESKLA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 10568751 [H]