Click here to switch to the map view.

The map label for this gene is smpB

Identifier: 220932408

GI number: 220932408

Start: 1683842

End: 1684309

Strand: Reverse

Name: smpB

Synonym: Hore_15720

Alternate gene names: 220932408

Gene position: 1684309-1683842 (Counterclockwise)

Preceding gene: 220932409

Following gene: 220932407

Centisome position: 65.33

GC content: 37.82

Gene sequence:

>468_bases
ATGGGACAGGATAATATAAAGGTTATAGCCCGGAATAAAAAGGCAAGACATGATTTTTTCATCGAAGAAACCTATGAATC
TGGTATCATTTTAAGGGGGACTGAAATTAAATCTGTCCGGGAGGGCAGGGTTAACTTAAAGGATAGCTTTGCCCTGGTTG
AGAATGGTGAAGTATTCTTATATAATATGCATATCAGTCCCTATAAGCAGGGGAATCGTTATAACCATGACCCCGGGAGG
AAAAGAAAACTTTTACTCCATAAGAGTGAAATTAGAAAACTGATCGGTAAAACTAAACAGAGGGGTTATTCTCTGGTTCC
TTTGAGTATCTATTTAAAAAACAATCTGGCCAAGATTGAACTGGCCCTTGCTAAAGGTAAAAAGAAATATGACAAACGTC
AGGAAATAGCCAAAAAAACAGCTGAACGTGAAATAAGACGGGCCTTTAAAGAAAGGCAGCGTTATTAA

Upstream 100 bases:

>100_bases
GACTTACCGGTTTGGTGACAGGGTAAGGGTCAGGGTTGAACGGGTCAATCTAGATGAAAGACAGATAGATTTTAGCCTCA
TCGAGTAGAGGAGGGATAAA

Downstream 100 bases:

>100_bases
CTTGACATTTATATACTGGTAAGTTATAATTTATAATACAAAACTCTACAGGATAAATCTGGGGGTGTTCCGGGTTTCGC
CTGCATGGTGAATCCTTCAG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGQDNIKVIARNKKARHDFFIEETYESGIILRGTEIKSVREGRVNLKDSFALVENGEVFLYNMHISPYKQGNRYNHDPGR
KRKLLLHKSEIRKLIGKTKQRGYSLVPLSIYLKNNLAKIELALAKGKKKYDKRQEIAKKTAEREIRRAFKERQRY

Sequences:

>Translated_155_residues
MGQDNIKVIARNKKARHDFFIEETYESGIILRGTEIKSVREGRVNLKDSFALVENGEVFLYNMHISPYKQGNRYNHDPGR
KRKLLLHKSEIRKLIGKTKQRGYSLVPLSIYLKNNLAKIELALAKGKKKYDKRQEIAKKTAEREIRRAFKERQRY
>Mature_154_residues
GQDNIKVIARNKKARHDFFIEETYESGIILRGTEIKSVREGRVNLKDSFALVENGEVFLYNMHISPYKQGNRYNHDPGRK
RKLLLHKSEIRKLIGKTKQRGYSLVPLSIYLKNNLAKIELALAKGKKKYDKRQEIAKKTAEREIRRAFKERQRY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=148, Percent_Identity=41.8918918918919, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_HALOH (B8CYF2)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002509316.1
- ProteinModelPortal:   B8CYF2
- SMR:   B8CYF2
- GeneID:   7314245
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_15720
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18277; Mature: 18145

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQDNIKVIARNKKARHDFFIEETYESGIILRGTEIKSVREGRVNLKDSFALVENGEVFL
CCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCHHHHHCCCCCCCCCEEEEECCCEEE
YNMHISPYKQGNRYNHDPGRKRKLLLHKSEIRKLIGKTKQRGYSLVPLSIYLKNNLAKIE
EEEEECCCCCCCCCCCCCCCHHHHEECHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEE
LALAKGKKKYDKRQEIAKKTAEREIRRAFKERQRY
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GQDNIKVIARNKKARHDFFIEETYESGIILRGTEIKSVREGRVNLKDSFALVENGEVFL
CCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCHHHHHCCCCCCCCCEEEEECCCEEE
YNMHISPYKQGNRYNHDPGRKRKLLLHKSEIRKLIGKTKQRGYSLVPLSIYLKNNLAKIE
EEEEECCCCCCCCCCCCCCCHHHHEECHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEE
LALAKGKKKYDKRQEIAKKTAEREIRRAFKERQRY
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA